Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0409
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841...    29   2.6  
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904...    28   3.4  

>09_04_0600 +
           18883094-18883393,18883606-18883755,18883851-18884142,
           18884697-18884858,18884958-18885021,18887573-18888080
          Length = 491

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 290 SLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSC 406
           S M   L+  V  H S  +L Y D+TT+ + + +P  +C
Sbjct: 450 SRMRLALQLCVRRHTSWCMLLYSDTTTYGLNVTAPSGAC 488


>03_02_0514 +
           9038606-9039790,9040211-9040432,9040548-9040655,
           9041608-9041802,9041905-9042153,9042525-9042672,
           9042673-9042779,9043311-9043475,9044506-9045948
          Length = 1273

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 317 LVNSHVSSNLLNYRDSTTFSIEIISP 394
           +V S  SSNLLN +D  +F +E + P
Sbjct: 492 IVGSVTSSNLLNPQDDLSFKLEYVHP 517


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,819,993
Number of Sequences: 37544
Number of extensions: 131303
Number of successful extensions: 265
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)