Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0409
(483 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_27524| Best HMM Match : RVT_1 (HMM E-Value=1.30321e-43) 27 6.1
SB_24320| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_24260| Best HMM Match : Rotavirus_VP7 (HMM E-Value=7.7) 27 6.1
SB_12986| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_7633| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_7040| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_51996| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_18362| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_17216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_6674| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_2851| Best HMM Match : RVT_1 (HMM E-Value=3.50325e-43) 27 6.1
>SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 281 FCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLFXEMI 433
FC+ M S +NS + + LN++ ST E++ K S G F + I
Sbjct: 183 FCWQPMCS-----INSEIRTTFLNFKPSTIADFELLREKLSLLNGTFHQYI 228
>SB_27524| Best HMM Match : RVT_1 (HMM E-Value=1.30321e-43)
Length = 593
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 492 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 540
>SB_24320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 165 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 213
>SB_24260| Best HMM Match : Rotavirus_VP7 (HMM E-Value=7.7)
Length = 319
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 268 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 316
>SB_12986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 167 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 215
>SB_7633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 286 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 334
>SB_7040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 227 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 275
>SB_51996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 275 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 323
>SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1415
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 286 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 334
>SB_18362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 162 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 210
>SB_17216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 167 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 215
>SB_6674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 202 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 250
>SB_2851| Best HMM Match : RVT_1 (HMM E-Value=3.50325e-43)
Length = 890
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 254 ISMCTVKINFCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCK 409
ISMC++ LMV + YL+ + +N L+ R++ + I+PKY+ K
Sbjct: 789 ISMCSILFKR-LQLMVPE--YLIETLKLNNTLHNRNTRFSGLNFITPKYTRK 837
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,827,533
Number of Sequences: 59808
Number of extensions: 168749
Number of successful extensions: 357
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -