Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0409
         (483 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-3|CAJ14154.1|  277|Anopheles gambiae predicted protein ...    24   2.4  
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    24   2.4  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    24   2.4  
AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.        22   9.6  

>CR954257-3|CAJ14154.1|  277|Anopheles gambiae predicted protein
           protein.
          Length = 277

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 308 LKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLFXEM 430
           + Y  N+H+   +   +   +    ++ P+   KKGLF  M
Sbjct: 57  ISYQPNAHLGEQITYSKTQGSVECTLVIPQAKNKKGLFLTM 97


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 255 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 299


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 336 ET*ELTKYFNFETINEKQKFIFTVHILIITENNYTKIFRPTSIYW 202
           +T EL K F+F     +++ I   H L +TE      F+   + W
Sbjct: 291 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 335


>AY578804-1|AAT07309.1|  133|Anopheles gambiae maverick protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 115 TQRCTTSKKRCC 150
           T  CT   KRCC
Sbjct: 23  TTACTAGNKRCC 34


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,227
Number of Sequences: 2352
Number of extensions: 5746
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42285900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)