Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0409
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AB070577-1|BAC66472.1|  396|Caenorhabditis elegans L-3,4-dihydro...    28   4.1  
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    27   9.4  

>Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical
           protein C06H5.7 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 124 IFAWPSTTSTFTLALDSRFFLGTFWSASTSF 32
           +  W        + ++S FF+G+FWSA  S+
Sbjct: 98  VLTWHDINRDMVVVIES-FFIGSFWSAMVSY 127


>AB070577-1|BAC66472.1|  396|Caenorhabditis elegans
           L-3,4-dihydroxyphenylalanine receptorprotein.
          Length = 396

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 124 IFAWPSTTSTFTLALDSRFFLGTFWSASTSF 32
           +  W        + ++S FF+G+FWSA  S+
Sbjct: 98  VLTWHDINRDMVVVIES-FFIGSFWSAMVSY 127


>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
           protein F55C5.4 protein.
          Length = 1010

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 293 LMVSKLKYLVNSHVSSNLLNYRD 361
           + +++LKYL+ SH +SNL+  +D
Sbjct: 588 MTLNRLKYLLQSHSTSNLIAMKD 610


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 115 WPSTTSTFTLALDSRFFLGTFWSASTSFSYWCLFL 11
           W   T  F  +L   F   + WS   SFSY C  L
Sbjct: 84  WGPRTCFFGYSLMLHFLSHSLWSLLLSFSYRCYIL 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,336,141
Number of Sequences: 27780
Number of extensions: 138315
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)