Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0408
(403 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 140 9e-33
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 109 2e-23
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 108 5e-23
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 105 3e-22
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 91 1e-17
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 86 3e-16
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 79 3e-14
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 3e-11
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 2e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 2e-10
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 64 1e-09
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 63 2e-09
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 60 2e-08
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 60 2e-08
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 59 3e-08
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 59 4e-08
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 58 5e-08
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 56 3e-07
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 54 8e-07
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 2e-06
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 51 7e-06
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 51 7e-06
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 51 1e-05
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 50 2e-05
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 46 3e-04
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 45 6e-04
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 45 6e-04
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 44 0.001
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 43 0.003
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 42 0.006
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 39 0.042
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 38 0.056
UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=... 33 2.8
UniRef50_Q5KN64 Cluster: Putative uncharacterized protein; n=1; ... 32 3.7
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 32 3.7
UniRef50_Q55DS5 Cluster: Putative uncharacterized protein; n=1; ... 31 6.4
UniRef50_UPI00015B4221 Cluster: PREDICTED: similar to tyrosine-p... 31 8.5
UniRef50_Q7UIH6 Cluster: Putative uncharacterized protein; n=1; ... 31 8.5
UniRef50_A3Q5C9 Cluster: Uncharacterized domain 1; n=5; Mycobact... 31 8.5
UniRef50_Q8GYW8 Cluster: Putative uncharacterized protein At2g25... 31 8.5
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 140 bits (339), Expect = 9e-33
Identities = 80/126 (63%), Positives = 94/126 (74%), Gaps = 1/126 (0%)
Frame = +2
Query: 17 MAVNNISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 196
MAV ISKKRKFV DG+FKAELN FLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 197 GEKGRRIRELTSVVQKRFNIQSNL*NCMLKRWLL-VVFALSPRPNL*DTSLSEVSLYRRA 373
GEKGRRIRELT+VVQKRF ++ + A++ +L L +++ RRA
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAV-RRA 118
Query: 374 CYGVLR 391
CYGVLR
Sbjct: 119 CYGVLR 124
Score = 74.1 bits (174), Expect = 9e-13
Identities = 38/49 (77%), Positives = 39/49 (79%)
Frame = +1
Query: 256 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVPSCLLWCSPFIME 402
PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAV FIME
Sbjct: 80 PEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 109 bits (263), Expect = 2e-23
Identities = 62/130 (47%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 5 RHEIMAVNNISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRT 184
RH + + +SKKR V DGVF AEL FL RELA+DG++GVE RVTP R+EI+I +T+T
Sbjct: 47 RHTTIKMGPLSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKT 106
Query: 185 QSVLGEKGRRIRELTSVVQKRFNIQSNL*NCMLKR-WLLVVFALSPRPNL*DTSLSEVSL 361
+ VLGEKGRRIRELT+ +Q+RFN + +R + + A++ +L LS + +
Sbjct: 107 REVLGEKGRRIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQV 166
Query: 362 YRRACYGVLR 391
RRA G++R
Sbjct: 167 -RRAAMGIIR 175
Score = 47.2 bits (107), Expect = 1e-04
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +1
Query: 241 EAIQHPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVPSCLLWCSPFIME 402
+ + E ++L+AE+V RGL A+AQAESLR+KL+ L V + ++ME
Sbjct: 126 QRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVME 179
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 108 bits (259), Expect = 5e-23
Identities = 55/81 (67%), Positives = 64/81 (79%)
Frame = +2
Query: 23 VNNISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 202
V +SKKRKF DGVF A LN LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 203 KGRRIRELTSVVQKRFNIQSN 265
KG++I+ELTSVVQKRF N
Sbjct: 62 KGKKIKELTSVVQKRFEFLEN 82
Score = 53.6 bits (123), Expect = 1e-06
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +1
Query: 259 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAV 363
E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 81 ENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM 115
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 105 bits (252), Expect = 3e-22
Identities = 59/120 (49%), Positives = 74/120 (61%)
Frame = +2
Query: 32 ISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 211
+SKK+K V DGVF AELN F TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 212 RIRELTSVVQKRFNIQSNL*NCMLKRWLLVVFALSPRPNL*DTSLSEVSLYRRACYGVLR 391
RI ELTS++ KRF + +R + + + L RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 90.6 bits (215), Expect = 1e-17
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +2
Query: 35 SKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 205
SKKR+FV DG+F+AELN FLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 85.8 bits (203), Expect = 3e-16
Identities = 39/73 (53%), Positives = 56/73 (76%)
Frame = +2
Query: 32 ISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 211
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 212 RIRELTSVVQKRF 250
+ +ELT +QKRF
Sbjct: 78 KHKELTQFLQKRF 90
Score = 35.9 bits (79), Expect = 0.30
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 253 HPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAV 363
+ + ++++AE + +GLCA AQ E++ YKL+ + V
Sbjct: 92 YSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPV 128
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 79.0 bits (186), Expect = 3e-14
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Frame = +2
Query: 17 MAVNNISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 196
M +K R+ + G+F AELN LTREL ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 197 GEKGRRIRELTSVVQKRFNIQSNL*NCMLKR-WLLVVFALSPRPNL*DTSLSEVSLYRRA 373
GRR++E+ ++QKR+ ++ + + R + AL+ +L ++ + RRA
Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPA-RRA 119
Query: 374 CYGVLR 391
Y ++R
Sbjct: 120 AYSIIR 125
Score = 37.5 bits (83), Expect = 0.098
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 259 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVPSCLLWCSPFIME 402
E S+E++ +++ +GL A+ Q ESLRYKLI + F+M+
Sbjct: 82 EDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMD 129
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 3e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +2
Query: 101 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 235
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 2e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +2
Query: 101 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 238
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 2e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 101 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 235
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.003
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +2
Query: 101 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 196
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.1 bits (149), Expect = 1e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +2
Query: 29 NISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEII 166
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 63.3 bits (147), Expect = 2e-09
Identities = 27/74 (36%), Positives = 50/74 (67%)
Frame = +2
Query: 41 KRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 220
+R F+ + V + ++ FL +EL GY G++++ TP+ +++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 221 ELTSVVQKRFNIQS 262
ELT +++K+F +++
Sbjct: 64 ELTRILEKQFGLEN 77
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 60.1 bits (139), Expect = 2e-08
Identities = 23/75 (30%), Positives = 51/75 (68%)
Frame = +2
Query: 32 ISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 211
++ +++F+ DG+ + +++ F EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 212 RIRELTSVVQKRFNI 256
IR++T+ ++ RFN+
Sbjct: 61 NIRKITTELEDRFNL 75
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 59.7 bits (138), Expect = 2e-08
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Frame = +2
Query: 14 IMAVNNISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 193
+M N+ +KFV G+ K EL+ +L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 194 LGEKGRRIRELTSVVQKRFNIQSNL*NCMLKRWLLVVFALSPR--PNL*DTSLSEVSLYR 367
+G +GR IR + VQ+RF + + + +K L L+PR ++L +R
Sbjct: 62 IGRRGRNIRRVEEEVQERFPLLGRV-SIEVKE--LPSPELNPRVVARRLASALERGIHFR 118
Query: 368 RACYGVLRSSWN 403
RA YG LR N
Sbjct: 119 RAAYGALRRIMN 130
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 59.3 bits (137), Expect = 3e-08
Identities = 25/74 (33%), Positives = 48/74 (64%)
Frame = +2
Query: 41 KRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 220
++KF+ DGV + FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 221 ELTSVVQKRFNIQS 262
+LT + ++I+S
Sbjct: 64 QLTQDLATDYDIES 77
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 58.8 bits (136), Expect = 4e-08
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +2
Query: 158 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIQSNL*NCMLKRW-LLVVFALSPRPNL* 334
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF N +++ V +A++ +L
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 335 DTSLSEVSLYRRACYGVL 388
L + + RRA YGVL
Sbjct: 161 FKLLGGL-VVRRAGYGVL 177
Score = 50.4 bits (115), Expect = 1e-05
Identities = 27/48 (56%), Positives = 31/48 (64%)
Frame = +1
Query: 259 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVPSCLLWCSPFIME 402
E +VELYAEK R AIAQAESLR+KL+GGL V F+ME
Sbjct: 135 ENNVELYAEKFNNRVFYAIAQAESLRFKLLGGLVVRRAGYGVLSFVME 182
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 58.4 bits (135), Expect = 5e-08
Identities = 24/74 (32%), Positives = 49/74 (66%)
Frame = +2
Query: 41 KRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 220
++KFV DG KA ++ + +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 221 ELTSVVQKRFNIQS 262
+LT V ++++++
Sbjct: 64 KLTRDVANKYSLEN 77
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 55.6 bits (128), Expect = 3e-07
Identities = 21/74 (28%), Positives = 49/74 (66%)
Frame = +2
Query: 41 KRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 220
++ FV +G+ + ++ +L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 221 ELTSVVQKRFNIQS 262
+T ++ +F++++
Sbjct: 63 AITQKLKNKFDLEN 76
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 54.4 bits (125), Expect = 8e-07
Identities = 24/74 (32%), Positives = 44/74 (59%)
Frame = +2
Query: 41 KRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 220
KR F+ + K +++ +L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 221 ELTSVVQKRFNIQS 262
+L + +K F +++
Sbjct: 65 QLAQIFEKVFGLEN 78
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 2e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +2
Query: 101 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 241
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 51.2 bits (117), Expect = 7e-06
Identities = 23/74 (31%), Positives = 44/74 (59%)
Frame = +2
Query: 41 KRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 220
KR F+ K ++ +L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 221 ELTSVVQKRFNIQS 262
+L V++K F +++
Sbjct: 65 QLAQVLEKFFGLEN 78
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 51.2 bits (117), Expect = 7e-06
Identities = 21/74 (28%), Positives = 44/74 (59%)
Frame = +2
Query: 41 KRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 220
+R FVG+ V + ++ + +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 221 ELTSVVQKRFNIQS 262
ELT + +++++
Sbjct: 63 ELTETLATEYSVKN 76
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 50.8 bits (116), Expect = 1e-05
Identities = 23/80 (28%), Positives = 51/80 (63%)
Frame = +2
Query: 17 MAVNNISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 196
M+V + K+ F+ + + +++ +L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 197 GEKGRRIRELTSVVQKRFNI 256
G +G+ I+++T V+++ F I
Sbjct: 61 GRRGQTIKQITKVLEEWFGI 80
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 49.6 bits (113), Expect = 2e-05
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = +2
Query: 77 ELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 256
+L FL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 257 QS 262
+S
Sbjct: 76 KS 77
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 46.0 bits (104), Expect = 3e-04
Identities = 17/75 (22%), Positives = 44/75 (58%)
Frame = +2
Query: 38 KKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 217
K+RKF+ + V + + ++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 218 RELTSVVQKRFNIQS 262
+++T ++K++ I++
Sbjct: 62 QQMTDTLEKKYGIET 76
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 44.8 bits (101), Expect = 6e-04
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 44 RKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 223
RK + G+ LN +L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 224 LTSVVQKRFNIQS 262
+ V+++ F I++
Sbjct: 66 IAEVLEREFGIEN 78
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 44.8 bits (101), Expect = 6e-04
Identities = 23/74 (31%), Positives = 44/74 (59%)
Frame = +2
Query: 41 KRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 220
+RKFV + + K + ++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 221 ELTSVVQKRFNIQS 262
LT + K F I++
Sbjct: 64 ALTEKL-KDFGIEN 76
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 44.0 bits (99), Expect = 0.001
Identities = 17/41 (41%), Positives = 30/41 (73%)
Frame = +1
Query: 235 STEAIQHPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL 357
+ + ++ P++SVE+ EKV +GLCA+ QA +R K++GG+
Sbjct: 84 AAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGV 124
Score = 43.6 bits (98), Expect = 0.001
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +2
Query: 47 KFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 226
+F+ +G+ AEL F + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 227 TSVVQKRFNI 256
+ +R +
Sbjct: 81 QHLAAQRLEV 90
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 42.7 bits (96), Expect = 0.003
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +2
Query: 41 KRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 220
K F+ + K L+ FL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 221 ELTSVVQKRFNIQS 262
+L +++Q F +++
Sbjct: 67 KLMTIMQTHFGLEN 80
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 41.5 bits (93), Expect = 0.006
Identities = 27/117 (23%), Positives = 54/117 (46%)
Frame = +2
Query: 47 KFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 226
K++ D + +AEL+ F +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 227 TSVVQKRFNIQSNL*NCMLKRWLLVVFALSPRPNL*DTSLSEVSLYRRACYGVLRSS 397
++ RF N + + + + + L E RRA Y ++R++
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTA 132
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 38.7 bits (86), Expect = 0.042
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +2
Query: 44 RKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 223
R F+ V + + +L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 224 LTSVVQKRFNIQS 262
L ++ F +++
Sbjct: 69 LQYRLKSDFKLEN 81
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 38.3 bits (85), Expect = 0.056
Identities = 15/73 (20%), Positives = 40/73 (54%)
Frame = +2
Query: 44 RKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 223
++ + D K + +L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 224 LTSVVQKRFNIQS 262
L +++ +FN+ +
Sbjct: 63 LADILKSKFNLDN 75
>UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=1;
Arabidopsis thaliana|Rep: Uncharacterized protein
At3g06190.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 295
Score = 32.7 bits (71), Expect = 2.8
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 265 IALDVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSD 140
+ ++ ES S+L + + LSEH+L GH +L ADG D
Sbjct: 243 LEVEAESCPSLLSELLEYVARLSEHSLTSSGHRKELFADGCD 284
>UniRef50_Q5KN64 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 744
Score = 32.3 bits (70), Expect = 3.7
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 256 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVPSCLLWCSP 390
PE S EL A+KV T G ++A S + GLAVP+ + SP
Sbjct: 206 PESSAELLAKKVKTYGKSSLATLSSSIKRPSDGLAVPTGVSSSSP 250
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 32.3 bits (70), Expect = 3.7
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +2
Query: 128 VEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIQSNL*NCMLKRWLLVVF 307
VE+ P R +++ R V+G KG I ++ + VQKR N + + +KR L +
Sbjct: 57 VEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLNKKVQIKVKEIKRMELNAY 116
Query: 308 ALSPRPNL*DTS-LSEVSLYRRACYGVLRS 394
++ T+ +S R+AC G ++S
Sbjct: 117 LVAQNVARQLTARVSFRKCLRQACAGTMKS 146
>UniRef50_Q55DS5 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1546
Score = 31.5 bits (68), Expect = 6.4
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 26 NNISKKRKFVG-DGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 202
N I K K +G + F + + L + V +TP+ S I+ +R+ + E
Sbjct: 631 NQIMYKLKLLGMNAAFSFKTQITFSDTLVIGVATATAVFLTPLPSPPILQISRSLEITDE 690
Query: 203 KGRRIRELTSVVQKRFNIQSN 265
K RR+ EL + ++K+ + N
Sbjct: 691 KTRRLHELQTKIEKKSHQNHN 711
>UniRef50_UPI00015B4221 Cluster: PREDICTED: similar to
tyrosine-protein kinase pr2; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to tyrosine-protein
kinase pr2 - Nasonia vitripennis
Length = 1345
Score = 31.1 bits (67), Expect = 8.5
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 187 KCARRERTQNP*ADFRSTEAIQHP---EQSVELYAEKVATRGLCAIAQAESLRYKLIGGL 357
KC RER QN +F AI H E V LY + T L + + LR L+ L
Sbjct: 205 KCLSRERMQNNPIEFLKEAAIMHSIDHEHIVRLYGVVLDTNSLMLVTELAPLR-SLLECL 263
Query: 358 AVPS 369
PS
Sbjct: 264 KEPS 267
>UniRef50_Q7UIH6 Cluster: Putative uncharacterized protein; n=1;
Pirellula sp.|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 210
Score = 31.1 bits (67), Expect = 8.5
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 271 LQIALDVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPDFHAGVAVLGQLPSE 92
L IA V L+ QL ++ PGG + + A G+ F +GVA +G + +E
Sbjct: 24 LPIAEGVHPCLWTAEQLEKRCQLRTQSRSGPGGQHRNRTASGAFLTFDSGVAEMGPITAE 83
>UniRef50_A3Q5C9 Cluster: Uncharacterized domain 1; n=5;
Mycobacterium|Rep: Uncharacterized domain 1 -
Mycobacterium sp. (strain JLS)
Length = 150
Score = 31.1 bits (67), Expect = 8.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 291 HLFSIQFYRLLWMLNRFCTTEVSSRILRPFSPSTLCVLVAIIMISERMGVTR 136
H + FY ++ + TTE +LRP S + I+ + +R GV R
Sbjct: 72 HCLGVVFYPVIPAGSWVATTEFKLNLLRPVSTGVCVAVTDIVSLGKRSGVAR 123
>UniRef50_Q8GYW8 Cluster: Putative uncharacterized protein
At2g25150; n=2; Arabidopsis thaliana|Rep: Putative
uncharacterized protein At2g25150 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 461
Score = 31.1 bits (67), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 160 LRADGSDPDFHAGVAVLGQLPSEELIEFRLENSISNK 50
L+ SDP GV V+ +LP + ++EF+ E + K
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEFKREMATMKK 454
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 412,776,516
Number of Sequences: 1657284
Number of extensions: 7592526
Number of successful extensions: 21256
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 20813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21250
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17349842203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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