Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0408
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   124   4e-30
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   4.4  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  124 bits (300), Expect = 4e-30
 Identities = 73/125 (58%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
 Frame = +2

Query: 20  AVNNISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
           A   ISKKRKFV DGVF AELN F TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 200 EKGRRIRELTSVVQKRFNIQSNL*NCMLKR-WLLVVFALSPRPNL*DTSLSEVSLYRRAC 376
           EKGRRIRELT++VQKRF    N      ++     + A++   +L    L+ +++ RRA 
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAV-RRAA 121

Query: 377 YGVLR 391
           YGVLR
Sbjct: 122 YGVLR 126



 Score = 60.9 bits (141), Expect = 7e-11
 Identities = 29/48 (60%), Positives = 34/48 (70%)
 Frame = +1

Query: 259 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVPSCLLWCSPFIME 402
           E +VELYAEKV  RGLCA+AQ ESLRYKL+ GLAV         ++ME
Sbjct: 83  ENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVME 130


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
 Frame = -2

Query: 345 KLVS*RFGLGDSAKTTSSHLFSIQFYRLLWMLNRFCTTEVSS-------RILRPFSPSTL 187
           K V+ + G  D  K   +  +  +FYR L  L++    E+S         + RP+   + 
Sbjct: 533 KYVAEKSGCSDYRKILVTETYKGRFYRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSD 592

Query: 186 CVLVAIIMISE 154
            +LV +  IS+
Sbjct: 593 DILVPVYHISD 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,862
Number of Sequences: 5004
Number of extensions: 30667
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)