Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0408
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 138 2e-33
01_05_0767 - 25034577-25034716,25035231-25035300,25035960-25036271 29 1.8
08_02_0624 - 19434168-19435352 28 2.4
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 27 4.2
01_06_0197 + 27416724-27417119 27 4.2
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 27 5.6
02_02_0468 + 10633992-10634064,10635998-10636130,10636244-106363... 27 5.6
11_06_0463 + 23879587-23879771,23879783-23881658 27 7.3
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685... 27 7.3
08_01_0204 + 1642169-1642687 26 9.7
06_03_1064 - 27300735-27301829 26 9.7
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701... 26 9.7
03_05_0181 - 21621561-21621932,21622024-21622329 26 9.7
01_06_0136 - 26839247-26839257,26839448-26839534,26840246-26840408 26 9.7
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 26 9.7
01_01_0498 - 3666752-3667072,3667670-3668061,3668571-3668912,366... 26 9.7
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 138 bits (333), Expect = 2e-33
Identities = 79/121 (65%), Positives = 91/121 (75%), Gaps = 1/121 (0%)
Frame = +2
Query: 32 ISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 211
ISKKRKFV DGVF AELN LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 212 RIRELTSVVQKRFNIQSNL*NCMLKRW-LLVVFALSPRPNL*DTSLSEVSLYRRACYGVL 388
RIRELTSVVQKRFN N ++ + A++ +L L +++ RRACYGVL
Sbjct: 67 RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV-RRACYGVL 125
Query: 389 R 391
R
Sbjct: 126 R 126
Score = 68.5 bits (160), Expect = 2e-12
Identities = 34/49 (69%), Positives = 36/49 (73%)
Frame = +1
Query: 256 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVPSCLLWCSPFIME 402
PE VELYAEKV RGLCAIAQAESLRYKL+GGLAV F+ME
Sbjct: 82 PENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVME 130
>01_05_0767 - 25034577-25034716,25035231-25035300,25035960-25036271
Length = 173
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 5 RHEIMAVNNISKKRKFVGDGVFKAE 79
RHEIM V N+S+ K + D V ++E
Sbjct: 122 RHEIMHVFNVSRGSKLINDSVNRSE 146
>08_02_0624 - 19434168-19435352
Length = 394
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +3
Query: 288 GGYSWSLRYRPGRISK-----IQAYRRSRCTVV--LAMVFSVH-HG 401
GGYSW++R+ P +K + Y R TVV + FS H HG
Sbjct: 62 GGYSWAIRFYPAGSTKEEERHVSVYLELRSTVVEKVTARFSFHVHG 107
>05_01_0500 -
4171090-4171191,4171989-4172061,4172376-4172701,
4173164-4173555,4174521-4174853,4177118-4177209,
4178052-4178111,4178760-4178903,4180142-4180213,
4180345-4180510,4180776-4180923
Length = 635
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 318 GDSAKTTSSHLFSIQFYRLLWMLNRFCTTEVSSRILRPFSPS 193
GD T + S+ +R L L FC T+ ++ PF P+
Sbjct: 289 GDDQFHTEVEVISLIVHRNLLRLTGFCITDTERLLVYPFMPN 330
>01_06_0197 + 27416724-27417119
Length = 131
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 4 SARDHGREQYFKEAKICWRW 63
+ARDHG + A+I WRW
Sbjct: 24 TARDHGATAAVETARIPWRW 43
>03_05_0834 - 28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 318 GDSAKTTSSHLFSIQFYRLLWMLNRFCTTEVSSRILRPF 202
G++A L S+ +R L L FCTT+ ++ PF
Sbjct: 888 GEAAFLREVELISVAVHRNLLRLIGFCTTQTERLLVYPF 926
>02_02_0468 +
10633992-10634064,10635998-10636130,10636244-10636315,
10637028-10637171,10637271-10637342,10637451-10637516,
10637603-10637673,10637796-10637936,10638347-10638688,
10638989-10639383,10639481-10639795
Length = 607
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 318 GDSAKTTSSHLFSIQFYRLLWMLNRFCTTEVSSRILRPF 202
G++A L S+ +R L L FCTT+ ++ PF
Sbjct: 322 GEAAFLREVELISVAVHRNLLKLIGFCTTQTERLLVYPF 360
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 288 GGYSWSLRYRPGR 326
GGY+W LRY P R
Sbjct: 367 GGYTWRLRYYPNR 379
>06_03_0311 +
19466258-19466303,19466496-19467087,19468059-19468524,
19470028-19470081,19470112-19470226,19470499-19470605
Length = 459
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 195 STLCVLVAIIMISERMGVTR 136
++LCVL+ I++ISE +GV R
Sbjct: 3 TSLCVLLCILVISEVVGVPR 22
>08_01_0204 + 1642169-1642687
Length = 172
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 288 GGYSWSLRYRPGRISKIQAYRRSRCTVVLAM 380
GGY W++RY P S +A R V+ M
Sbjct: 45 GGYDWAVRYYPNGDSAAEAACRQPSVVLELM 75
>06_03_1064 - 27300735-27301829
Length = 364
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 217 DSASFLSEHTLCPGGHNNDLRADGSDP 137
D F S C GGH+ ++R DP
Sbjct: 27 DDGEFFSSRRYCVGGHDWEIRLRPKDP 53
>04_03_0874 +
20467608-20468306,20468575-20468736,20470083-20470160,
20470636-20470714,20470809-20470954,20471064-20471132,
20471262-20471430,20471526-20471776
Length = 550
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 105 WPRTATPAWKSGSLPSARRSLLWPPGHKVCSER 203
WP A + SGS PS+ RSL G+ E+
Sbjct: 190 WPPVAVRSSASGSRPSSPRSLADSEGYNSADEQ 222
>03_05_0181 - 21621561-21621932,21622024-21622329
Length = 225
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 365 GTARPPISLYLRDSAWAIAQRPRVATFSAYNSTD 264
GT RP ++ ++ AWA A+R +A A +S D
Sbjct: 73 GTGRPEEAVLRKNVAWADARRAALAGEGAQDSGD 106
>01_06_0136 - 26839247-26839257,26839448-26839534,26840246-26840408
Length = 86
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 318 GDSAKTTSSHLFSIQFYRLLWMLNRFCTT 232
GD+A T++ +F IQF +L + RF TT
Sbjct: 46 GDAATTSAGEIFGIQF--ILKIYRRFYTT 72
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 89 FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 208
F+T ++ DG++ VE R ++ + +++ +R +G G
Sbjct: 151 FVTAKVGNDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDG 190
>01_01_0498 -
3666752-3667072,3667670-3668061,3668571-3668912,
3669982-3670131,3670211-3670308,3670430-3670489,
3670605-3670676,3670766-3670909,3671003-3671074,
3671170-3671302,3671649-3671751
Length = 628
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 318 GDSAKTTSSHLFSIQFYRLLWMLNRFCTTEVSSRILRPFSPS 193
G+ T + S+ +R L L FCTTE ++ P+ P+
Sbjct: 342 GEVQFQTEVEVISLAVHRNLLRLIGFCTTENERLLVYPYMPN 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,466,786
Number of Sequences: 37544
Number of extensions: 222270
Number of successful extensions: 604
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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