Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0408
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       140   4e-34
SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_41005| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.7  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   10.0 
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    26   10.0 

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  140 bits (339), Expect = 4e-34
 Identities = 78/121 (64%), Positives = 92/121 (76%), Gaps = 1/121 (0%)
 Frame = +2

Query: 32  ISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 211
           ISKKRKFV DG+FKAELN FLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 212 RIRELTSVVQKRFNIQSNL*NCMLKRWLL-VVFALSPRPNL*DTSLSEVSLYRRACYGVL 388
           RIRELTSVVQKRF           ++     + A++   +L    +  +++ RRACYGVL
Sbjct: 65  RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAV-RRACYGVL 123

Query: 389 R 391
           R
Sbjct: 124 R 124



 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 38/49 (77%), Positives = 38/49 (77%)
 Frame = +1

Query: 256 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVPSCLLWCSPFIME 402
           PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAV         FIME
Sbjct: 80  PEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLRFIME 128


>SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 590

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 293 LLVVFALSPRPNL*DTSLSEVSLYRRACYGVLR 391
           LL+   L PRP L  TS    SLYR+  +G+LR
Sbjct: 558 LLLSLLLVPRPPLLITSRILSSLYRKVLFGLLR 590


>SB_41005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 568

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 247 IQHPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL 357
           + HPE S E+ +E ++T  LC  A    +  +L GGL
Sbjct: 462 VGHPELSFEIRSEIISTYALCGFANLGFIGVQL-GGL 497


>SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = +2

Query: 155 SEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIQSNL*NCMLKRWLLVVFALSPRPNL* 334
           S  +I AT + +VLG  G     L  +    ++I S+  +C +++ +  + ALS      
Sbjct: 226 SSFVIAATTSLTVLGPIGALASALLGIAGTIYDIYSSYPSCNMQKMIRHLEALSDECRSE 285

Query: 335 DTSLSEVSLYRRACYGVLRSS 397
             S + ++L     YG +  S
Sbjct: 286 VKSSASLALKAGNLYGTIYES 306


>SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 146 PIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIQSN 265
           P+ +  +   TRT  +  E+GR  R L   +QK++ ++SN
Sbjct: 324 PVEAIELYRQTRTGVIASEQGRS-RALKDSLQKKYGLESN 362


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 311 LSPRPNL*DTSLSEVSLYRRACYGVLRSSWN 403
           L+ +P+    +LS +SL R  C G + SSWN
Sbjct: 125 LTRKPHKFCWNLSVISLDRWCCMGKVLSSWN 155


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 158 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIQSN 265
           E+I +  +T  V+GE GR I  + S    R  I+ +
Sbjct: 399 EVIPLGAKTSRVIGEGGRSINSIRSQSGARIQIKED 434


>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 379

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 291 GYSWSLRYRPGRISKIQAYRRSRCTVVLAMVFSVHHG 401
           G+  S R RP  +S+ +A  R R   ++  +FS   G
Sbjct: 336 GFLQSFRLRPATLSRTRASSRKRPAPLMTAIFSSQGG 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,004
Number of Sequences: 59808
Number of extensions: 244700
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)