Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0408
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 124 2e-29
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.7
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 29 1.7
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 27 5.0
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 27 5.0
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 27 5.0
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 27 6.7
Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 26 8.8
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 124 bits (300), Expect = 2e-29
Identities = 71/127 (55%), Positives = 92/127 (72%), Gaps = 2/127 (1%)
Frame = +2
Query: 17 MAVN-NISKKRKFVGDGVFKAELN*FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 193
MA N N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 194 LGEKGRRIRELTSVVQKRFNIQSNL*NCMLKRWL-LVVFALSPRPNL*DTSLSEVSLYRR 370
LGE+GRRI+ELTSVVQKRF + ++ + A++ +L + +++ RR
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAV-RR 119
Query: 371 ACYGVLR 391
ACYGVLR
Sbjct: 120 ACYGVLR 126
Score = 66.5 bits (155), Expect = 7e-12
Identities = 33/48 (68%), Positives = 36/48 (75%)
Frame = +1
Query: 259 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVPSCLLWCSPFIME 402
E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAV FIME
Sbjct: 83 EGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIME 130
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +1
Query: 4 SARDHGREQY-FKEAK--ICWRWSFQGGTQLVPHXXXXXXXXXXXXSPGHSHPL 156
+ RDH + Q+ K+ +C W+F L+ H PGH PL
Sbjct: 220 TVRDHMKSQHNIKKVYNCLCCNWTFLNQVHLISHKTCLKQTGKPCCRPGHMEPL 273
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +1
Query: 4 SARDHGREQY-FKEAK--ICWRWSFQGGTQLVPHXXXXXXXXXXXXSPGHSHPL 156
+ RDH + Q+ K+ +C W+F L+ H PGH PL
Sbjct: 220 TVRDHMKSQHNIKKVYNCLCCNWTFLNQVHLISHKTCLKQTGKPCCRPGHMEPL 273
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 315 DSAKTTSS--HLFSIQFYRLLWMLNRFCTTEVSSRILRPFSPSTL 187
D+A T+S+ +L S++ + C TEVS+ P SPSTL
Sbjct: 57 DTASTSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTL 101
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 315 DSAKTTSS--HLFSIQFYRLLWMLNRFCTTEVSSRILRPFSPSTL 187
D+A T+S+ +L S++ + C TEVS+ P SPSTL
Sbjct: 97 DTASTSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTL 141
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 315 DSAKTTSS--HLFSIQFYRLLWMLNRFCTTEVSSRILRPFSPSTL 187
D+A T+S+ +L S++ + C TEVS+ P SPSTL
Sbjct: 57 DTASTSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTL 101
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 315 DSAKTTSS--HLFSIQFYRLLWMLNRFCTTEVSSRILRPFSPSTL 187
D+A T+S+ +L S++ + C TEVS+ P SPSTL
Sbjct: 105 DTASTSSASPNLVSVEMHPYTKSEEVECQTEVSTISSHPTSPSTL 149
>Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical
protein H13N06.5 protein.
Length = 462
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 85 LVPHXXXXXXXXXXXXSPGHSHPLGDHYYGHQD 183
L+PH S GHSH G H +G D
Sbjct: 211 LIPHATPAGDGHGHSHSHGHSHGGGGHSHGAHD 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,282,679
Number of Sequences: 27780
Number of extensions: 175587
Number of successful extensions: 490
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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