Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0408
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.75 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   2.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   5.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 133  SPGHSHPLGDHYYGHQDTKCARRERT 210
            S  H  PL +H Y   D+  +  ERT
Sbjct: 1323 SEDHRRPLSEHIYSSIDSDYSTLERT 1348


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 178 QDTKCARRERTQNP*ADFRSTEAIQHPEQSVEL 276
           +D K ++ +   NP A++ ++  + H E S+ L
Sbjct: 172 EDMKLSQFDLVANPTANYSASTTLSHAEYSMLL 204



 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  YFKEAKICWRWSFQGGTQ 84
           YF+++ +  R +FQGG +
Sbjct: 56  YFRQSWVDRRLAFQGGKE 73


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 315 DSAKTTSSHLFSIQFYRLLWMLN 247
           D +   S+H  +I  Y  LW+L+
Sbjct: 122 DCSGIVSAHKIAIDEYERLWVLD 144


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -2

Query: 231 EVSSRILRPFSPSTLCVLVA 172
           ++   +++ F+PSTL V+++
Sbjct: 198 QIGHHLIQTFAPSTLVVMLS 217


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 178 GGHNNDLRADGSDPDFHAGVAV 113
           G   N L ++ +DP   AG+ +
Sbjct: 117 GDEENGLTSESTDPGLVAGIVI 138


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 178 GGHNNDLRADGSDPDFHAGVAV 113
           G   N L ++ +DP   AG+ +
Sbjct: 88  GDEENGLTSESTDPGLVAGIVI 109


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 178  QDTKCARRERTQ 213
            QD  C R+ERTQ
Sbjct: 1646 QDHDCIRQERTQ 1657


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 80  VPP*KLHLQQIFASLKYCS 24
           VPP  LH Q ++    YC+
Sbjct: 298 VPPLSLHGQLLWREFFYCA 316


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 162 SLLWPPGHKVCSERKDAESV 221
           +L +P G K+ S +KD + +
Sbjct: 355 TLQFPSGMKIISSKKDRQEL 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,272
Number of Sequences: 438
Number of extensions: 2032
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)