Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0403
         (481 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1MTC3 Cluster: Novel protein similar to vitellogenin 1...    33   3.3  
UniRef50_A1JNR8 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_Q05FV0 Cluster: Putative uncharacterized protein; n=1; ...    32   5.8  
UniRef50_Q3DD61 Cluster: Putative uncharacterized protein; n=2; ...    32   7.7  

>UniRef50_Q1MTC3 Cluster: Novel protein similar to vitellogenin 1;
            n=3; Danio rerio|Rep: Novel protein similar to
            vitellogenin 1 - Danio rerio (Zebrafish) (Brachydanio
            rerio)
          Length = 1495

 Score = 33.1 bits (72), Expect = 3.3
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = +1

Query: 7    DSSCKYFVWVNRT-CLIVPIFNVKTK------NASNISNSTFYNYLTSHYLHIN 147
            D   +  V V++T C ++P   +KT       NA+ I N+T YN +  H +HIN
Sbjct: 934  DPELRSIVPVHKTLCSVIPHIGIKTCMEVLSCNAAFIKNTTLYNMIGQHGMHIN 987


>UniRef50_A1JNR8 Cluster: Putative uncharacterized protein; n=1;
           Yersinia enterocolitica subsp. enterocolitica 8081|Rep:
           Putative uncharacterized protein - Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
          Length = 162

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
 Frame = -1

Query: 436 LLQTDVHLKFFKLYI--SFKLQISWLRAIS 353
           LL   +HL+ +++Y+  SFKLQ+ WLR+++
Sbjct: 23  LLTAFLHLEIYRVYVWLSFKLQVCWLRSLT 52


>UniRef50_Q05FV0 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 152

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = +1

Query: 64  FNVKTKNASNISNSTFYNYL----TSHYLHINKLSVILRALGHCYIKLLKAAADVKIYTF 231
           F +K  N  N+SN T    L      +Y+++ K ++I +   + ++ +L    ++K+Y  
Sbjct: 5   FKIKIFNTKNLSNKTVPGILYIDNNIYYIYVLKNNLINKVFKNSFLNVLYYKKNIKVYIK 64

Query: 232 YT*LIELRNSF*ISLQIK 285
            T    ++NS  IS ++K
Sbjct: 65  NTKFSFIKNSI-ISFELK 81


>UniRef50_Q3DD61 Cluster: Putative uncharacterized protein; n=2;
           Streptococcus agalactiae|Rep: Putative uncharacterized
           protein - Streptococcus agalactiae CJB111
          Length = 622

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 61  IFNVKTKNASNISNSTFYNYL 123
           IF VK+KN ++ISN T+Y+Y+
Sbjct: 445 IFKVKSKNFTSISNETYYDYV 465


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,038,450
Number of Sequences: 1657284
Number of extensions: 6247011
Number of successful extensions: 14776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14772
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)