Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0403
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   1.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   2.6  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 363  RSQEI*SLKEMYSLKNFRCTSVCNNIFK 446
            ++  I  L E  S KN+RC  +C NI K
Sbjct: 945  QNYRIQKLTEEISYKNYRCPFLCRNIEK 972


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 460  FLY*ILKILLQTDVHLKFFKLYISFKLQISWLRAISILVYY*NRLANS 317
            F+  IL I ++  ++  F  LY++ K+ +S     S L+Y   +LANS
Sbjct: 1059 FVLPILSIKIEKSLYKGFCYLYLTLKVFLSISSNRSALLYQLLKLANS 1106


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 165 ESSWTLLYKTTKSSSR 212
           +++W+LLYK T + SR
Sbjct: 524 DAAWSLLYKATSNKSR 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,473
Number of Sequences: 5004
Number of extensions: 30799
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)