Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0403
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)                 27   6.1  

>SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1004

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 49  LIVPIFNVKTKNAS--NISNSTFYNYLTSHYLHINKL 153
           L V +F   T+ A   NI NST  NYL++ ++ IN L
Sbjct: 654 LTVMVFGTTTQQAVTVNIKNSTVVNYLSNGFVIINVL 690


>SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)
          Length = 459

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 1   FNDSSCKYFVWVNRTCLIVPIFNVKTKNASN----ISNSTFYNYLTSHYLHI 144
           F DS+C+Y  ++  T     I  +   + +     +  S +  Y T HYLH+
Sbjct: 125 FTDSACQYNGFIAITLAAASIQTLALTSVNRYFKVVKPSLYRKYFTMHYLHV 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,873,467
Number of Sequences: 59808
Number of extensions: 189455
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)