Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0403
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical p...    30   0.76 
Z74031-13|CAE54903.1|  383|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical p...    27   7.0  

>U21308-12|AAB93315.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK1290.9 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 14  PVNILYGLTGHVSLFQSLMLRRKTRQI 94
           P+ ++Y + GHV  F+ L+LR+ +R +
Sbjct: 78  PIGVMYDVLGHVDPFERLVLRKVSRNL 104


>Z74031-13|CAE54903.1|  383|Caenorhabditis elegans Hypothetical
           protein F32D8.12c protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 394 CTA*KTLDVHQSVTIFLKFNTKNEKNI 474
           C +  +L++ +S T+F++F+  NEK +
Sbjct: 182 CNSYSSLNLRESPTLFIEFHGSNEKEV 208


>Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical
           protein F32D8.12b protein.
          Length = 460

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 394 CTA*KTLDVHQSVTIFLKFNTKNEKNI 474
           C +  +L++ +S T+F++F+  NEK +
Sbjct: 259 CNSYSSLNLRESPTLFIEFHGSNEKEV 285


>Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical
           protein F32D8.12a protein.
          Length = 474

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 394 CTA*KTLDVHQSVTIFLKFNTKNEKNI 474
           C +  +L++ +S T+F++F+  NEK +
Sbjct: 273 CNSYSSLNLRESPTLFIEFHGSNEKEV 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,306,732
Number of Sequences: 27780
Number of extensions: 159737
Number of successful extensions: 362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)