Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0403
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59500.1 68416.m06640 integral membrane HRF1 family protein c...    29   1.6  
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1...    29   1.6  
At3g60740.1 68416.m06795 tubulin folding cofactor D identical to...    27   8.7  

>At3g59500.1 68416.m06640 integral membrane HRF1 family protein
           contains Pfam domain PF03878: Hrf1 family
          Length = 269

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 22  YFVWVNRTCLIVPIFNVKTKNASNISNSTFYNYLTSHYLHI 144
           Y+V +  TCL   +F VKT      + S  Y+    HYL I
Sbjct: 207 YYVLIPWTCLCTGVFLVKTMKRVLFAESRSYDSSRHHYLLI 247


>At1g26370.1 68414.m03217 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 717

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +1

Query: 1   FNDSSCKYFVWVNRTCLIVPIFNVKTKNASNISNSTFYNYLTSHYLHINKLSVILRALGH 180
           FN SSC   +   R CL    F    K A    + T+    +   +HI+  SV+ RA   
Sbjct: 623 FNVSSCGNDMLAFRRCLAASFF---LKAAQRQLDGTYRALESGEVVHIHPTSVLFRAKPE 679

Query: 181 CYI 189
           C I
Sbjct: 680 CVI 682


>At3g60740.1 68416.m06795 tubulin folding cofactor D identical to
            tubulin folding cofactor D GI:20514263 from [Arabidopsis
            thaliana]
          Length = 1254

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 127  SHYLHINKLSVILRALGHCYIKLLKAAAD 213
            SH++     S +L  LGH Y  + KAAA+
Sbjct: 1137 SHFISTKAFSQLLSFLGHRYPMIRKAAAE 1165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,431,587
Number of Sequences: 28952
Number of extensions: 137001
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)