Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0402
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 60 2e-10
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 48 5e-07
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 31 0.081
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 29 0.43
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 28 0.75
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 27 0.99
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 27 1.3
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 1.7
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 1.7
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 2.3
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 4.0
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 5.3
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 5.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 7.0
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 7.0
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 24 9.3
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 24 9.3
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 59.7 bits (138), Expect = 2e-10
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 232 KTEVDRRRHAVVTVRDAK-HTNFVEFRNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
K + R H +++ R+ K NF+E+ N K+VYRRYA L FC CVD DN+L LE I
Sbjct: 28 KVRLKARIHQLISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMI 85
Score = 50.0 bits (114), Expect = 2e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +2
Query: 152 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKL 244
MI+FILIQNR GK RL+K+Y+ FDDDEK +L
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRL 31
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +1
Query: 232 KTEVDRRRHAVVTVRDAKHTNFVEFRNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
+ ++ R ++V R K NFVE++ KIVYRRYA L F ++ +DN L LE I
Sbjct: 29 RAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRRYASLFFVCGIEQDDNELIILEVI 85
Score = 35.1 bits (77), Expect = 0.005
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 155 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEE 253
I+F L+ +R GK RLAKW+ E+ K+I +
Sbjct: 3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRD 35
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 31.1 bits (67), Expect = 0.081
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 152 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLI 247
MI + I N GK RL K+Y D+ +QKLI
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLI 32
Score = 31.1 bits (67), Expect = 0.081
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 256 HAVVTVRDAKHTNFVEFRNF----KIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
+A V+ R NF+E +I+YR+YA L F VD ++ L L+ I
Sbjct: 36 YAAVSTRPPTACNFLESNLIAGKNRIIYRQYATLYFVFVVDEGESELGILDLI 88
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 28.7 bits (61), Expect = 0.43
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -2
Query: 326 YTILKFLNSTKFVCFASLTVTTACLLLSTSVFRHHQNSYTISQVESCLLGSGSK 165
+ + ++ F S +VTTAC++L T FR H+ +I +++S ++ K
Sbjct: 21 FKVPSWITYKSFWIAVSSSVTTACVILGTLEFRKHR---SIRRLQSMIVPEAGK 71
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 27.9 bits (59), Expect = 0.75
Identities = 22/83 (26%), Positives = 29/83 (34%)
Frame = -1
Query: 429 YHLGPRQSYDGLEITQIVIIXIDTYTEDKTCIPPVYYLEISELDKVRVFRVSDGDDCMPX 250
Y + P Q DG+ + + D +E C P Y E+S +K F D P
Sbjct: 158 YQVIPTQICDGVRGLEYAVYNYDLPSESTFCHPSNGYTEVSTFNKPAYFGSKDLKQSAPL 217
Query: 249 XXXXXXXXXXXFIYHFASRVLPA 181
Y AS LPA
Sbjct: 218 FTGIFSSLDDIPTYS-ASDYLPA 239
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 27.5 bits (58), Expect = 0.99
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 91 GGVNPSLKVIFKKKAITKRENDKIHFD 171
GGV + V+ KKK I K END+ + +
Sbjct: 334 GGVGSAFGVVGKKKQIYKGENDEFYVE 360
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 200 AKWYMNFDDDEKQKLIEEGMQSSPSETR 283
++WY+ FD D+ +L+E + SE R
Sbjct: 178 SRWYLPFDKDDDNQLVEAYAKYFSSENR 205
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 1.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 161 FILIQNRAGKTRLAKWYM-NFDDDEKQKLIEEGMQSSPSETRNT 289
F +QNR+G+ L +W+ F D Q + + + S S NT
Sbjct: 21 FFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLDNT 64
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 1.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 179 RAGKTRLAKWYMNFDDDEKQKLIEEGMQSSPSETRNTRTLSS 304
+ GK +L KW ++E+ L SS S+T + LSS
Sbjct: 165 KKGKKQLRKWDDQITEEEQAALNYSSQASSASQTVDNSQLSS 206
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 2.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 142 KRENDKIHFDPEPSRQDSTCEMVYE 216
+ + ++H +PEP QDS E++ +
Sbjct: 35 QESSSEVHANPEPDNQDSNAEILID 59
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 230 EKQKLIEEGMQSSPSETRNTRTLSSSEI 313
EK IE+ ++ S T+N T+SSS +
Sbjct: 328 EKSFTIEQNRENEKSSTKNDSTVSSSAV 355
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -1
Query: 336 IPPVY---YLEISELDKVRVFRVSDG 268
IPP+ YL+IS+L K + VSDG
Sbjct: 106 IPPMVLHTYLDISDLSKNQTLSVSDG 131
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 5.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 279 RETHELCRVQKFQDSIQEVCXSCLLYMCRC 368
R ELCR +K + + + C +C++Y C
Sbjct: 5 RNACELCRRKKLRCNGELTCQNCMVYGEEC 34
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 146 VKMIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIE 250
+K +R + + R + + NF DD+KQK+++
Sbjct: 1233 LKSLRHLPLSQRILDANVTRLPSNFTDDKKQKIMK 1267
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 7.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 261 SRHRQRRETHELCRVQKFQDSIQEVCXSCLLYMCRC 368
SR R RR CR +K + S E C +C+ +C
Sbjct: 30 SRRRVRRACLS-CRAKKIRCSGSEPCQACIATPSQC 64
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 283 KHTNFVEFRNFKIVYRRYAXL 345
KH +++FRNF +V+ Y L
Sbjct: 654 KHCVWLKFRNFDLVFMAYKRL 674
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 24.2 bits (50), Expect = 9.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 179 RAGKTRLAKWYMNFDDDEKQKLIEEGMQSSPSETRN 286
RAG T A + +D E KLI M+SS E N
Sbjct: 381 RAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPN 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,205
Number of Sequences: 5004
Number of extensions: 32479
Number of successful extensions: 132
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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