Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0402
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0662 + 5601147-5601176,5601419-5601517,5601601-5601651,560... 72 2e-13
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 63 9e-11
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 46 1e-05
08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895 46 1e-05
11_03_0175 + 11241151-11241157,11241253-11241425,11241619-112417... 32 0.18
07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899... 28 3.0
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 27 5.2
08_02_1069 - 24084393-24084410,24085232-24085387,24086485-240865... 27 5.2
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136... 27 5.2
03_05_0871 + 28396964-28399843 27 5.2
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 27 6.9
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 27 6.9
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 27 6.9
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 27 6.9
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 27 6.9
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 27 9.1
06_03_0425 - 20659298-20659634,20659964-20660075,20660161-20660272 27 9.1
>12_01_0662 +
5601147-5601176,5601419-5601517,5601601-5601651,
5602822-5602995,5603869-5603928,5604759-5604800
Length = 151
Score = 71.7 bits (168), Expect = 2e-13
Identities = 32/57 (56%), Positives = 39/57 (68%)
Frame = +1
Query: 232 KTEVDRRRHAVVTVRDAKHTNFVEFRNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
K +V+ H +V RD K TNFVEFR K++YRRYA L F +CVD+ DN L YLE I
Sbjct: 37 KHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSMCVDITDNELAYLECI 93
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +2
Query: 149 KMIRFILIQNRAGKTRLAKWYMNFDDDEKQKL 244
+ IRFIL+QNR GKTRLAK+Y+ +D EK K+
Sbjct: 9 QQIRFILLQNRQGKTRLAKYYVPLEDSEKHKV 40
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 63.3 bits (147), Expect = 9e-11
Identities = 27/57 (47%), Positives = 37/57 (64%)
Frame = +1
Query: 232 KTEVDRRRHAVVTVRDAKHTNFVEFRNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
+T+V R ++ R K NFVE++ +K+VYRRYA L FC+C+D DN L LE I
Sbjct: 139 RTKVIRELSGLILTRGPKLCNFVEWKGYKVVYRRYASLYFCMCIDAEDNELEVLEII 195
Score = 37.5 bits (83), Expect = 0.005
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 155 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEE 253
I F+L+ +R GK RL KWY + E+ K+I E
Sbjct: 113 INFVLLISRQGKVRLTKWYSPYTQKERTKVIRE 145
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +1
Query: 292 NFVEFRNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
+FVE RN+K+VYRRYA L F + VD ++N L LE I
Sbjct: 49 SFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFI 85
Score = 32.3 bits (70), Expect = 0.18
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 155 IRFILIQNRAGKTRLAKWYMNFDDDEKQKL 244
IRF+++ N+ G+TR+A++Y + DE++ L
Sbjct: 3 IRFVVMVNKQGQTRVAQYYEHLSVDERRAL 32
>08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895
Length = 227
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +1
Query: 292 NFVEFRNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
+FVE RN+K+VYRRYA L F + VD ++N L LE I
Sbjct: 100 SFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFI 136
Score = 34.3 bits (75), Expect = 0.045
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2
Query: 155 IRFILIQNRAGKTRLAKWYMNFDDDEKQKL 244
IRF+L N+ G+TRLA++Y + DE++ L
Sbjct: 3 IRFVLFVNKQGQTRLAQYYEHLSIDERRAL 32
>11_03_0175 +
11241151-11241157,11241253-11241425,11241619-11241702,
11242895-11242936,11243407-11243517,11245384-11245575,
11245776-11245859,11246162-11246259,11246670-11246859
Length = 326
Score = 32.3 bits (70), Expect = 0.18
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 195 RVLPARFWIKMNLIIFTFSY--GFFFKYYFQRRVDASF 88
R L R+W+K N+ I FSY +F+ +YF + AS+
Sbjct: 93 RSLKDRYWVKANIWIIIFSYVGNYFWTHYFFTVLGASY 130
>07_03_1568 -
27788314-27788619,27789125-27789294,27789868-27789979,
27790063-27790117,27790201-27790316,27790731-27790812,
27790974-27791228,27791326-27791454,27791539-27791747
Length = 477
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 203 KWYMNFD-DDEKQKLIEEGMQSSPSETRNTRTLSSSEISR*YTG 331
+W N+D +DEK +E + E ++ L +SEIS Y G
Sbjct: 412 RWGQNYDSEDEKAAAVEAWISCHGKEPKSVIGLQASEISWDYEG 455
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 94 LLFLKLVIRNLYLKFSDFNFDSYKIQ 17
LL ++ +N Y+KFS FD K++
Sbjct: 246 LLLFVILCKNFYIKFSSVEFDEIKME 271
>08_02_1069 -
24084393-24084410,24085232-24085387,24086485-24086560,
24086885-24086994
Length = 119
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 212 MNFDDDEKQKLIEEGMQSSPSETRNTRTLS--SSEISR 319
+ F DD K ++ E S +NT++LS SS I+R
Sbjct: 36 IRFQDDNKPLVLSESKNSEQENLKNTKSLSQLSSAIAR 73
>05_01_0190 +
1366791-1366817,1367536-1367616,1367858-1367900,
1368104-1368182,1368291-1368450,1368565-1368692,
1369134-1369202,1369796-1369883,1370516-1370591,
1370767-1370840,1372635-1372742,1373783-1373944,
1374179-1374283,1374447-1374527,1374603-1375803,
1376654-1376750,1378086-1378160,1378461-1378623
Length = 938
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 336 IPPVYYLEISELDKVRVFRVSDGDDCMP 253
+PPV+Y E+ L + F V+ G+ +P
Sbjct: 157 VPPVFYCELCRLSRADPFWVTAGNPLLP 184
>03_05_0871 + 28396964-28399843
Length = 959
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 333 PPVYYLEISELDKVRVFRVSDG 268
P + YL+IS L K+RVF V +G
Sbjct: 881 PELRYLKISGLKKLRVFHVGNG 902
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 218 FDDDEKQKLIEEGMQSSPSETRNTRTLSSS 307
FD++ +K+ +E +++PS+ R TR +S
Sbjct: 568 FDEEYNEKVTQESTKTNPSKRRVTRRFKTS 597
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 218 FDDDEKQKLIEEGMQSSPSETRNTRTLSSS 307
FD++ +K+ +E +++PS+ R TR +S
Sbjct: 611 FDEEYNEKVTQESTKTNPSKRRVTRRFKTS 640
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 218 FDDDEKQKLIEEGMQSSPSETRNTRTLSSS 307
FD++ +K+ +E +++PS+ R TR +S
Sbjct: 611 FDEEYNEKVTQESTKTNPSKRRVTRRFKTS 640
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 263 TACLLLSTSVFRHHQNSYTISQVESCLL 180
T CL LS +++R Q+ TI+Q+E L
Sbjct: 906 TECLSLSGTLYREMQHGETINQIEKLWL 933
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 218 FDDDEKQKLIEEGMQSSPSETRNTRTLSSS 307
FD++ +K+ +E +++PS+ R TR +S
Sbjct: 790 FDEEYNEKVTQESTKTNPSKRRVTRCFKTS 819
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 26.6 bits (56), Expect = 9.1
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -2
Query: 293 FVCFASLTVTTACLLLSTSVFRHHQNSYTISQVESCLLGSGSK*ILSFSRLVMAFFLNIT 114
F+C+A++ V A +L+ V +H Q + + LLGS + ++S L +A L +T
Sbjct: 141 FLCYAAIVVAAALVLIYFVVPQHGQTNIMVYIGVCSLLGSLT--VMSVKALGIA--LKLT 196
Query: 113 FKDGLTPPFF 84
F G+ F+
Sbjct: 197 F-SGVNQLFY 205
>06_03_0425 - 20659298-20659634,20659964-20660075,20660161-20660272
Length = 186
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 329 LYTILKFLNSTKFVCFASLTVTTACLLL-STSVFRHHQNSYTISQVESC-LLGSGSK 165
L T+ L ST+ C+ L A + S + + + +YT QV+SC LLG SK
Sbjct: 110 LQTLQDALCSTRKDCYGDLLREGAAAYINSVAAKKQAKFAYTTQQVKSCILLGLTSK 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,494,382
Number of Sequences: 37544
Number of extensions: 184102
Number of successful extensions: 514
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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