Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0402
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)              97   8e-21
SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      31   0.43 
SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
          Length = 141

 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 43/49 (87%), Positives = 45/49 (91%)
 Frame = +1

Query: 256 HAVVTVRDAKHTNFVEFRNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
           HA+VTVRDAKHTNFVEFRNFKIVYRRYA L FC CVDV+DNNL YLEAI
Sbjct: 35  HALVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCFCVDVSDNNLYYLEAI 83



 Score = 73.3 bits (172), Expect = 8e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +2

Query: 155 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEE 253
           IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEE
Sbjct: 1   IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEE 33


>SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +1

Query: 262 VVTVRDAKHTNFVEF------RNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
           +V+ RD    NF+E        +FK+VYR YA L F  CVD +++ L  L+ I
Sbjct: 12  LVSRRDDNVCNFLEGGSLIGGADFKLVYRHYATLYFVFCVDSSESELGILDLI 64


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 326 YTILKFLNSTKFVCFASLTVTTACLLLSTSVFRHHQNSYTIS---QVESCLLGSG 171
           Y  ++ + +T + CFAS+ VTTA        +R+  NS  IS    V+ C   +G
Sbjct: 223 YYSVECMRTTTYGCFASVGVTTATARCRPHHYRYRTNSVNISDKKNVDECQNNNG 277


>SB_25445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 267 HRQRRETHELCRVQKFQDSIQEVCXS--CLLY 356
           HR   E H+L RVQ+  ++++++C    C LY
Sbjct: 104 HRTSGEKHDLPRVQRELEAMKDLCHQHICQLY 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,526,301
Number of Sequences: 59808
Number of extensions: 226036
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)