Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0402
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chai...    97   7e-21
AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, smal...    50   6e-07
AC025721-3|AAM15614.1|  192|Caenorhabditis elegans Adaptin, smal...    37   0.006
AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a prot...    30   0.67 
Z81454-7|CAB76407.1|  378|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF068721-7|AAC19264.1|  531|Caenorhabditis elegans Hypothetical ...    28   3.6  
AF068721-6|AAL00880.1|  564|Caenorhabditis elegans Hypothetical ...    28   3.6  
U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal embroy...    27   6.2  

>U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chain
           (clathrin associatedcomplex) protein 2 protein.
          Length = 142

 Score = 96.7 bits (230), Expect = 7e-21
 Identities = 43/49 (87%), Positives = 44/49 (89%)
 Frame = +1

Query: 256 HAVVTVRDAKHTNFVEFRNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
           HA VTVRDAKHTNFVEFRNFKIVYRRYA L FCICVD+ DNNL YLEAI
Sbjct: 36  HACVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDITDNNLYYLEAI 84



 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 33/34 (97%), Positives = 34/34 (100%)
 Frame = +2

Query: 152 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEE 253
           MIRFILIQNRAGKTRLAKWYM+FDDDEKQKLIEE
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMHFDDDEKQKLIEE 34


>AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 1 protein.
          Length = 157

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +1

Query: 229 RKTEVDRRRHAVVTVRDAKHTNFVEFRNFKIVYRRYAXLVFCICVDVNDNNLXYLEAI 402
           +K ++ R     +  R  K   F+E+++ K+VY+RYA L FC  ++ NDN L  LE I
Sbjct: 27  QKKKICRELITQILARKPKMCAFLEYKDLKVVYKRYASLYFCCAIEQNDNELITLEVI 84


>AC025721-3|AAM15614.1|  192|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 3 protein.
          Length = 192

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
 Frame = +1

Query: 229 RKTEVDRRRHAVVTVRDAKHTNFVEF------RNFKIVYRRYAXLVFCICVDVNDNNLXY 390
           ++ ++ R    +V+ RD    NF+E        +++++YR YA L F  CVD +++ L  
Sbjct: 27  KQQQIVRETFQLVSKRDDNVCNFLEGGTLIDGNDYRLIYRHYATLYFIFCVDSSESELGI 86

Query: 391 LEAI 402
           L+ I
Sbjct: 87  LDLI 90


>AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a protein
           protein 222 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 238 EVDRRRHAVVTVRDAKHTNFVEFRNFKIVYRRY 336
           E+D   H+ V+ R  +   F+EF   +IVYR +
Sbjct: 108 EIDAAAHSAVSFRMCRDWTFLEFSKHEIVYREF 140


>Z81454-7|CAB76407.1|  378|Caenorhabditis elegans Hypothetical
           protein B0391.11 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 238 EVDRRRHAVVTVRDAKHTNFVEFRNFKIVYRRY 336
           E+D   H+ V+ R  +   F+EF   +IVYR +
Sbjct: 108 EIDAVAHSAVSFRMCRDWAFLEFSKHEIVYREF 140


>AF068721-7|AAC19264.1|  531|Caenorhabditis elegans Hypothetical
           protein ZK1055.6a protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 131 KP*LNVKMIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEGMQSSPSE-TRNT 289
           +P L ++  R + I NR G  R+   Y N  DD  +++++  M   P E T+NT
Sbjct: 254 RPALKMRRQRGLRIMNRRGGPRMLSNYSNEIDDGVEEVLQT-MAPPPMEVTKNT 306


>AF068721-6|AAL00880.1|  564|Caenorhabditis elegans Hypothetical
           protein ZK1055.6b protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 131 KP*LNVKMIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEGMQSSPSE-TRNT 289
           +P L ++  R + I NR G  R+   Y N  DD  +++++  M   P E T+NT
Sbjct: 287 RPALKMRRQRGLRIMNRRGGPRMLSNYSNEIDDGVEEVLQT-MAPPPMEVTKNT 339


>U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal
           embroygenesis protein 8 protein.
          Length = 662

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 366 IDTYTEDKTCIPPVYYL 316
           +D  T+ KTC PP+ YL
Sbjct: 420 VDVLTDQKTCKPPIEYL 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,605,094
Number of Sequences: 27780
Number of extensions: 184407
Number of successful extensions: 635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)