Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0402
         (447 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   2.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   8.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 217 IHIPFRKSSLACSVLDQNESYHF 149
           I +  R+SSL C V   NES  +
Sbjct: 375 IDVSRRRSSLICDVYGVNESVSY 397


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 284 FASLTVTTACLLLSTS 237
           F +  VT ACLLL+ S
Sbjct: 2   FRATIVTVACLLLAAS 17


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 221 DDDEKQKLIEEGMQSSPSETR 283
           DDDE+ +  E+G   S +E R
Sbjct: 281 DDDEENEEEEDGRGQSEAEKR 301


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 221 DDDEKQKLIEE 253
           D+D K KLIEE
Sbjct: 190 DEDTKNKLIEE 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,870
Number of Sequences: 438
Number of extensions: 2160
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)