Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0398
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    27   2.0  
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   2.7  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    26   3.5  

>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 256 KAGYKVLSELQNLIKSGDASRNKIVDAT--NRFFTLIPHDFGVNNAPLLDNNEIIK 417
           K   K L E +   K   AS  K++     N F T  P+  G++ APL  +NE ++
Sbjct: 257 KEHLKSLEEFEEKQKVDLASALKMLTTKYDNLFNTSFPYSMGLHQAPLYGSNEEVE 312


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 490 SVSDCNRPYAISNFXTGYPSYRSSS 416
           S  DC+R Y ISN    +P Y S S
Sbjct: 9   SYDDCSRYYIISNMAFYFPVYDSDS 33


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 32  RNNFVKIPGRYFPLEIDYGDNETKTLTVDPKCELAEPVQRLIVTI-FDIHYMKQTLLEFE 208
           RN  VK PG+  PL+ID+     K+          EP+   IV+      Y K ++L+  
Sbjct: 11  RNELVKEPGKVPPLDIDF-KRSVKSSQFSQCAITDEPLYPPIVSCGLGKLYNKASILQML 69

Query: 209 LD 214
           LD
Sbjct: 70  LD 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,817
Number of Sequences: 5004
Number of extensions: 38808
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)