Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0398
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 48 7e-06
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179... 44 7e-05
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 40 0.001
08_01_0178 - 1509100-1511214 29 2.1
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 29 3.6
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 28 6.3
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940... 28 6.3
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 27 8.4
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 27 8.4
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Frame = +2
Query: 5 EKTEN---RWKDRNNFVKIPGRYFPLEIDYGDNE-TKTLTVDP-KCELAEPVQRLIVTIF 169
EKT N W+ + NF K PG+++PL+IDYG + K +D K L + L+ +F
Sbjct: 546 EKTGNPWEAWEQKTNFQKQPGKFYPLDIDYGVRQGPKRKDIDKMKSSLPPQLLELMNMLF 605
Query: 170 DIHYMKQTLLEFELD 214
+I + +LEF+++
Sbjct: 606 NIETYRAAMLEFKIN 620
Score = 35.1 bits (77), Expect = 0.042
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +1
Query: 181 HEADLARIRVGHRENASRKVV*ETKKAGYKVLSELQNLIKSGD-----ASRNKIVDATNR 345
+ A + ++ E K+ E + G++ L+E+QNL+ + + + IV A+NR
Sbjct: 610 YRAAMLEFKINMSEMPLGKLSKENIQKGFEALTEIQNLLGNTNNQELAVRESLIVAASNR 669
Query: 346 FFTLIP 363
FFTLIP
Sbjct: 670 FFTLIP 675
>01_03_0231 +
14014243-14014390,14015053-14015141,14017859-14017949,
14018088-14018215,14018703-14018784,14019022-14019081,
14019160-14019251,14019342-14019462,14019873-14019928,
14020193-14020272,14020774-14020820,14020940-14020989,
14021304-14021366,14021515-14021595,14021703-14021717,
14021875-14021985,14022072-14022147,14022350-14022492,
14022721-14022794,14023364-14023454,14023589-14023687
Length = 598
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 262 GYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAP--LLDNNEIIKTK 423
GY VL + N+I D R ++ T F+++IPHDFG ++D + +K K
Sbjct: 290 GYDVLKRISNVISGADTDRTQLEQLTGEFYSVIPHDFGFKKMSEFIIDTPQKLKAK 345
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 262 GYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAP--LLDNNEIIKTK 423
GY VL + N+I D R ++ T F+T+IPHDFG ++D + +K K
Sbjct: 355 GYDVLKRISNVISRAD--RRQLEQLTGEFYTVIPHDFGFKKMREFIIDTPQKLKAK 408
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 8 KTENRWKDRNNFVKIPGRYFPLEIDYGDNETKT-LTVDP------KCELAEPVQRLIVTI 166
KT N W DR +F +Y LE+DYG+ + +T V P + +L + I I
Sbjct: 263 KTNNHWSDRKSFECYARKYTWLEMDYGEADRETNKKVSPSTDQIKETKLETRIASFISLI 322
Query: 167 FDIHYMKQTLLEFELDTE 220
+I MKQ ++E +++
Sbjct: 323 CNISMMKQQMVEIGYNSD 340
>08_01_0178 - 1509100-1511214
Length = 704
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 501 SPCXQCLIVIDHTQFQISQQVIHHIGLRLYNFIIIQQRC 385
S C +C VIDH+Q ++ + H LR ++ +I C
Sbjct: 82 SSCDKCRGVIDHSQPTVTSECSHTFHLRCFSGSVICPAC 120
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 228 LSESCLRNKKSRLQSII*TAESHKKRRCESK*NCGC 335
++E CL +KS+ S E ++ C+SK +CGC
Sbjct: 189 INERCLELQKSKKSSKT-KVEGDNRKVCQSKTSCGC 223
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 73 QREVSPRNLDKVIPVFPTVLSFF 5
+R+ PR L+K IP+ P+V +FF
Sbjct: 255 KRQFKPRCLEKKIPIDPSVRNFF 277
>05_04_0349 +
20492334-20492494,20493245-20493324,20493951-20494020,
20494089-20494139,20494535-20494649,20495401-20496268,
20496453-20496628,20500217-20500276,20501617-20501694,
20501951-20502008,20502658-20502720,20503397-20503453,
20503599-20503661,20504081-20504454
Length = 757
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = -3
Query: 181 VVDVKDGDDESLHG-LGELTLGVDSE 107
V+D+ DG+D+ LHG G++T+ +DS+
Sbjct: 643 VIDIDDGEDD-LHGKSGDMTVDLDSD 667
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 53 PGRYFPLEIDYGDNETKTLTVDPKCELAEP 142
PG +E+ Y +N+T ++V P E EP
Sbjct: 344 PGSTVAMEVMYRENDTAAVSVSPVLESREP 373
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -3
Query: 73 QREVSPRNLDKVIPVFPTVLSFF 5
+R++ PR+ +K IP+ P+V +FF
Sbjct: 138 KRQLKPRSPEKKIPIDPSVKNFF 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,431,558
Number of Sequences: 37544
Number of extensions: 235184
Number of successful extensions: 571
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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