Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0398
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)                    67   1e-11
SB_34589| Best HMM Match : WGR (HMM E-Value=0.37)                      42   4e-04
SB_36208| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8)                  28   6.5  
SB_26968| Best HMM Match : TF_Otx (HMM E-Value=7.2)                    27   8.6  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           27   8.6  
SB_17321| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
          Length = 834

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 29/53 (54%), Positives = 38/53 (71%)
 Frame = +1

Query: 265 YKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIKTK 423
           Y VL E Q ++    AS+  ++D +NRF+TLIPHDFG+   PLLDN E+IKTK
Sbjct: 545 YSVLGEAQQILSEA-ASKTAVLDGSNRFYTLIPHDFGMRKPPLLDNQELIKTK 596



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +2

Query: 122 KCELAEPVQRLIVTIFDIHYMKQTLLEFELD 214
           K +L   +Q LI  IFD+  MK+TL+EFE+D
Sbjct: 497 KSKLPSQIQELIKMIFDVESMKKTLIEFEID 527


>SB_34589| Best HMM Match : WGR (HMM E-Value=0.37)
          Length = 113

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
 Frame = +2

Query: 5   EKTENRWKDRNNFVKIPGRYFPLEIDYGDNETKTLTVDPKCEL-AEP-------VQRLIV 160
           +KT+N W+DR +F K+ G+Y  L +DY   E   +    K E  A+P       V+ L+ 
Sbjct: 29  DKTKNDWEDRASFTKVQGKYDLLIMDYKAEENDEVDAPVKEEKPAKPESKLDCRVRELVE 88

Query: 161 TIFDIHYMKQTLLEFELDTE 220
            I ++  M++ L E + DT+
Sbjct: 89  LICNVQAMEEALKEMKYDTK 108


>SB_36208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +1

Query: 256 KAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDF 372
           KAGY+ L ++++ I  GD   NK+V A + F+T IPH F
Sbjct: 9   KAGYEALKKIESCISKGDYG-NKLVKACDEFYTRIPHCF 46


>SB_21950| Best HMM Match : PTN_MK_N (HMM E-Value=4.8)
          Length = 406

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 109 ECFRLIVTVVYFQ--REVSPRNLDKVIPVFPTV 17
           EC+R + T   F+  R V PR L  ++ V PTV
Sbjct: 367 ECYRYLRTQTCFENHRRVKPRGLPGLLVVLPTV 399


>SB_26968| Best HMM Match : TF_Otx (HMM E-Value=7.2)
          Length = 122

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 478 CNRPYAISNFXTGYPSYRSSSL 413
           C+ PY ++N  T  PS+R  SL
Sbjct: 7   CHNPYQLNNLVTLIPSFRKKSL 28


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 2   EEKTENRWKDRNNFVKIPGRYFPLEIDYGDNETKTLTVDPKCELAEPVQRLIVTIFDIHY 181
           EE +    K   +F+K PG+  P  +D   N+T ++ V    E    +  L+ T  DI +
Sbjct: 351 EENSPQMRKPTTHFLK-PGKLIPAGLDSTPNKTNSVAVCWSKETQLSIYSLVKTAKDIEH 409


>SB_17321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 478 CNRPYAISNFXTGYPSYRSSSL 413
           C+ PY ++N  T  PS+R  SL
Sbjct: 15  CHNPYQLNNLVTLIPSFRKKSL 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,088
Number of Sequences: 59808
Number of extensions: 294173
Number of successful extensions: 650
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)