Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0398
         (588 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribos...    57   2e-08
BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p pro...    57   2e-08
AY118947-1|AAM50807.1|  557|Drosophila melanogaster LD31274p pro...    57   2e-08
AF051548-1|AAC24518.1|  994|Drosophila melanogaster poly(ADP-rib...    57   2e-08

>D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribose)
           polymerase protein.
          Length = 994

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +2

Query: 5   EKTENRWKDRNNFVKIPGRYFPLEIDYGDNE--TKTLTVDPKCELAEPVQRLIVTIFDIH 178
           +KT N ++ R+NFVK  GR +P+EI Y D++   K  +     +L   VQ LI  IFDI 
Sbjct: 603 DKTGNEYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEISVQNLIKLIFDID 662

Query: 179 YMKQTLLEFELDTE 220
            M +TL+EF +D +
Sbjct: 663 SMNKTLMEFHIDMD 676



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 41/54 (75%)
 Frame = +1

Query: 256 KAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIK 417
           ++ Y+V+ E+ N+++ G ++  K++DATNRF+TLIPH+FGV    L++ ++ I+
Sbjct: 689 QSAYRVVKEIYNVLECG-SNTAKLIDATNRFYTLIPHNFGVQLPTLIETHQQIE 741


>BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p
           protein.
          Length = 994

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +2

Query: 5   EKTENRWKDRNNFVKIPGRYFPLEIDYGDNE--TKTLTVDPKCELAEPVQRLIVTIFDIH 178
           +KT N ++ R+NFVK  GR +P+EI Y D++   K  +     +L   VQ LI  IFDI 
Sbjct: 603 DKTGNEYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEISVQNLIKLIFDID 662

Query: 179 YMKQTLLEFELDTE 220
            M +TL+EF +D +
Sbjct: 663 SMNKTLMEFHIDMD 676



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 41/54 (75%)
 Frame = +1

Query: 256 KAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIK 417
           ++ Y+V+ E+ N+++ G ++  K++DATNRF+TLIPH+FGV    L++ ++ I+
Sbjct: 689 QSAYRVVKEIYNVLECG-SNTAKLIDATNRFYTLIPHNFGVQLPTLIETHQQIE 741


>AY118947-1|AAM50807.1|  557|Drosophila melanogaster LD31274p
           protein.
          Length = 557

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +2

Query: 5   EKTENRWKDRNNFVKIPGRYFPLEIDYGDNE--TKTLTVDPKCELAEPVQRLIVTIFDIH 178
           +KT N ++ R+NFVK  GR +P+EI Y D++   K  +     +L   VQ LI  IFDI 
Sbjct: 166 DKTGNEYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEISVQNLIKLIFDID 225

Query: 179 YMKQTLLEFELDTE 220
            M +TL+EF +D +
Sbjct: 226 SMNKTLMEFHIDMD 239



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 41/54 (75%)
 Frame = +1

Query: 256 KAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIK 417
           ++ Y+V+ E+ N+++ G ++  K++DATNRF+TLIPH+FGV    L++ ++ I+
Sbjct: 252 QSAYRVVKEIYNVLECG-SNTAKLIDATNRFYTLIPHNFGVQLPTLIETHQQIE 304


>AF051548-1|AAC24518.1|  994|Drosophila melanogaster
           poly(ADP-ribose) polymerase protein.
          Length = 994

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +2

Query: 5   EKTENRWKDRNNFVKIPGRYFPLEIDYGDNE--TKTLTVDPKCELAEPVQRLIVTIFDIH 178
           +KT N ++ R+NFVK  GR +P+EI Y D++   K  +     +L   VQ LI  IFDI 
Sbjct: 603 DKTGNEYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEISVQNLIKLIFDID 662

Query: 179 YMKQTLLEFELDTE 220
            M +TL+EF +D +
Sbjct: 663 SMNKTLMEFHIDMD 676



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 41/54 (75%)
 Frame = +1

Query: 256 KAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIK 417
           ++ Y+V+ E+ N+++ G ++  K++DATNRF+TLIPH+FGV    L++ ++ I+
Sbjct: 689 QSAYRVVKEIYNVLECG-SNTAKLIDATNRFYTLIPHNFGVQLPTLIETHQQIE 741


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,632,042
Number of Sequences: 53049
Number of extensions: 410508
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)