Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0398
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 52 4e-07
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 52 4e-07
Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical p... 28 4.3
DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein. 28 4.3
Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribo... 28 5.7
U88181-3|AAB42302.2| 523|Caenorhabditis elegans Hypothetical pr... 27 9.9
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +2
Query: 5 EKTENRWKDRNNFVKIPGRYFPLEIDYGDNETKT---LTVDPKCELAEPVQRLIVTIFDI 175
EKT+N W R +F K+PG + +E DY + T +T K L + V+ ++++IFD+
Sbjct: 544 EKTKNDWIYRKHFRKMPGMFSYVETDYSEFAQITDTEITPGSKTLLPKSVKEVVMSIFDV 603
Query: 176 HYMKQTLLEFELD 214
MK L FE+D
Sbjct: 604 ENMKSALKSFEMD 616
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/53 (32%), Positives = 35/53 (66%)
Frame = +1
Query: 265 YKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIKTK 423
++VL+++ +L+ ++I+D +N+F+T+IPH+FG+ +D+ IK K
Sbjct: 634 FEVLNDISDLLVKLPIDASRILDFSNKFYTIIPHNFGMRVPEPIDSFHKIKEK 686
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans
Poly(adp-ribose) metabolism enzymeprotein 1 protein.
Length = 945
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +2
Query: 5 EKTENRWKDRNNFVKIPGRYFPLEIDYGDNETKT---LTVDPKCELAEPVQRLIVTIFDI 175
EKT+N W R +F K+PG + +E DY + T +T K L + V+ ++++IFD+
Sbjct: 544 EKTKNDWIYRKHFRKMPGMFSYVETDYSEFAQITDTEITPGSKTLLPKSVKEVVMSIFDV 603
Query: 176 HYMKQTLLEFELD 214
MK L FE+D
Sbjct: 604 ENMKSALKSFEMD 616
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/53 (32%), Positives = 35/53 (66%)
Frame = +1
Query: 265 YKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIKTK 423
++VL+++ +L+ ++I+D +N+F+T+IPH+FG+ +D+ IK K
Sbjct: 634 FEVLNDISDLLVKLPIDASRILDFSNKFYTIIPHNFGMRVPEPIDSFHKIKEK 686
>Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 160 DDESLHGLGELTLGVDSECFRLIVTVVYFQREVSPRNLDKV 38
DD+SL +G LG F+ + ++YF E NL ++
Sbjct: 93 DDDSLKKIGISALGARKTIFQAVSLLLYFCHESEHENLQRL 133
>Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 160 DDESLHGLGELTLGVDSECFRLIVTVVYFQREVSPRNLDKV 38
DD+SL +G LG F+ + ++YF E NL ++
Sbjct: 93 DDDSLKKIGISALGARKTIFQAVSLLLYFCHESEHENLQRL 133
>DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein.
Length = 801
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 160 DDESLHGLGELTLGVDSECFRLIVTVVYFQREVSPRNLDKV 38
DD+SL +G LG F+ + ++YF E NL ++
Sbjct: 93 DDDSLKKIGISALGARKTIFQAVSLLLYFCHESEHENLQRL 133
>Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical
protein E02H1.4 protein.
Length = 538
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 340 NRFFTLIPHDFGVNNAPLLDNNEIIKTK 423
N++++LIPH FG P +D++ I+ +
Sbjct: 240 NKYYSLIPHSFGFCVPPKIDSHAKIQAE 267
>AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-2 protein.
Length = 538
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 340 NRFFTLIPHDFGVNNAPLLDNNEIIKTK 423
N++++LIPH FG P +D++ I+ +
Sbjct: 240 NKYYSLIPHSFGFCVPPKIDSHAKIQAE 267
>U88181-3|AAB42302.2| 523|Caenorhabditis elegans Hypothetical
protein C55B6.1a protein.
Length = 523
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 65 FPLEIDYGDNETKTLTVDPKCELAEPVQRLIVTIFDIHYMKQTLLEFE 208
F L +D G +++ D KC+ Q + TI+ + L+E E
Sbjct: 8 FVLTVDIGTTTIRSVVYDSKCKERGSYQEKVNTIYTTRNDDEVLVEIE 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,860,920
Number of Sequences: 27780
Number of extensions: 221557
Number of successful extensions: 486
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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