Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0398
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.0  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 118 VDSECFRLIVTVVYFQREVSPRNLDKVIPVF 26
           +D +CF+ I+      R+    +  K +P+F
Sbjct: 191 IDRQCFQTIMMRTGLSRQAEYTDFLKSVPIF 221


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 400 YPTAVRYLPRSRGVLK*KIY*WHPQFYFDS 311
           +  AV Y P ++ +    IY  +P ++FDS
Sbjct: 144 FSIAVLYRPDTKYMKFPAIYEIYPNYFFDS 173


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 400 YPTAVRYLPRSRGVLK*KIY*WHPQFYFDS 311
           +  AV Y P ++ +    IY  +P ++FDS
Sbjct: 144 FSIAVLYRPDTKYMKFPAIYEIYPNYFFDS 173


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 71  LEIDYGDNETKTLTVDPKCELAEPVQ 148
           + + YG     +LT+D + EL E +Q
Sbjct: 62  IRLTYGQTNHISLTLDLEYELVENLQ 87


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 71  LEIDYGDNETKTLTVDPKCELAEPVQ 148
           + + YG     +LT+D + EL E +Q
Sbjct: 100 IRLTYGQTNHISLTLDLEYELVENLQ 125


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 70 REVSPRNLDKVIPV 29
          RE SPRNL+K + V
Sbjct: 21 RENSPRNLEKSLNV 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,865
Number of Sequences: 438
Number of extensions: 2613
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)