Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0398
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ...    51   7e-07
At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+) A...    37   0.009
At1g24070.1 68414.m03038 glycosyl transferase family 2 protein s...    29   2.3  
At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s...    29   3.0  

>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
           NAD(+) ADP-ribosyltransferase, putative /
           poly[ADP-ribose] synthetase, putative similar to
           poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
           contains Pfam profiles PF00644: Poly(ADP-ribose)
           polymerase catalytic domain, PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region, PF02877:
           Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
           BRCA1 C Terminus (BRCT) domain
          Length = 983

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
 Frame = +2

Query: 5   EKTENRWKD---RNNFVKIPGRYFPLEIDYGDNE--TKTLTVDPKCELAEPVQRLIVTIF 169
           EKT N W+    + NF K PG++ PL+IDYG N+   K         LA  +  L+  +F
Sbjct: 589 EKTGNTWESWEQKTNFQKQPGKFLPLDIDYGVNKQVAKKEPFQTSSNLAPSLIELMKMLF 648

Query: 170 DIHYMKQTLLEFELD 214
           D+   +  ++EFE++
Sbjct: 649 DVETYRSAMMEFEIN 663



 Score = 35.1 bits (77), Expect = 0.035
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
 Frame = +1

Query: 262 GYKVLSELQNLIKSGDAS----RNKIVDATNRFFTLIP 363
           G++ L+E+Q L+   D       + +VDA+NRFFT+IP
Sbjct: 680 GFEALTEIQRLLTESDPQPTMKESLLVDASNRFFTMIP 717


>At4g02390.1 68417.m00323 poly (ADP-ribose) polymerase / NAD(+)
           ADP-ribosyltransferase / poly[ADP-ribose] synthetase
           (APP) identical to  SP|Q11207 Poly [ADP-ribose]
           polymerase (EC 2.4.2.30) (PARP) (ADPRT) (NAD(+) ADP-
           ribosyltransferase) (Poly[ADP-ribose] synthetase)
           {Arabidopsis thaliana}
          Length = 637

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 5   EKTENRWKDRNNFVKIPGRYFPLEIDYGDNE 97
           +KT+N W DR  F+  P  Y  LE+DYG  E
Sbjct: 236 DKTKNYWSDRKEFIPHPKSYTWLEMDYGKEE 266



 Score = 37.1 bits (82), Expect = 0.009
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +1

Query: 235 KVV*ETKKAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAP--LLDNNE 408
           K+   T   GY+VL  +  +I   D  R ++ + +  F+T+IPHDFG       ++D  +
Sbjct: 324 KISKSTISKGYEVLKRISEVIDRYD--RTRLEELSGEFYTVIPHDFGFKKMSQFVIDTPQ 381

Query: 409 IIKTK 423
            +K K
Sbjct: 382 KLKQK 386


>At1g24070.1 68414.m03038 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 552

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +2

Query: 2   EEKTEN--RWKDRNNFVKIPGRYFPLEID----YGDNETKTLTVDPKCELAEPVQRLIVT 163
           E K E   RW+     +++    +P+ +     Y + E   L++   C L  P+ RLIV 
Sbjct: 98  ERKPEKVYRWEAMQEDIELGHETYPMVLVQIPMYNEKEVLQLSIGAACRLIWPLDRLIVQ 157

Query: 164 IFD 172
           + D
Sbjct: 158 VLD 160


>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 504

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 20  RWKDRNNFVKIPGRYFPLEID----YGDNETKTLTVDPKCELAEPVQRLIVTIFD 172
           +W+     +++  + FP+ +     Y + E   L++   C L  P+ RLIV + D
Sbjct: 58  KWEAMQEDLELGNQNFPMVLVQIPMYNEREVFKLSIGAACRLIWPLDRLIVQVLD 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,579
Number of Sequences: 28952
Number of extensions: 200145
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)