Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0396
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 0.51
U55363-12|AAA97969.1| 320|Caenorhabditis elegans Hypothetical p... 30 1.2
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 29 2.7
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 29 2.7
AL110499-3|CAE18038.1| 437|Caenorhabditis elegans Hypothetical ... 29 3.6
Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 6.3
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 6.3
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 6.3
L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calciu... 28 6.3
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 28 6.3
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 6.3
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 28 6.3
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 28 6.3
AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical ... 28 6.3
Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical pr... 27 8.3
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 8.3
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 8.3
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 8.3
AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity... 27 8.3
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -2
Query: 470 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 357
RPS LT YG+ GL+ + K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197
>U55363-12|AAA97969.1| 320|Caenorhabditis elegans Hypothetical
protein ZC404.11 protein.
Length = 320
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 277 RHFSQSDVFLNFPSLVISCDLISIHRAYFFNGS-FSVLKSPVFSLFT 140
R ++ VFL+ L ++ D + + + FF+GS F +L S + S+F+
Sbjct: 150 RVYADGSVFLDISPLSLANDCLFLKTSIFFSGSCFKILPSILMSMFS 196
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 256 VFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 80
+F + + C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 5 IFFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
assigned gene nameprotein 177 protein.
Length = 1667
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/73 (34%), Positives = 33/73 (45%)
Frame = +3
Query: 39 VCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 218
+C +LA ALT + +E KH C K E LVN L G+ EN +L+K
Sbjct: 763 LCGILA-ALTRDLREKFNKH---CW---KTIEILVNILDLGERVAENMEAAYLCFSILVK 815
Query: 219 SQLMTKDGKFKKT 257
Q + KKT
Sbjct: 816 MQASFLSKQLKKT 828
>AL110499-3|CAE18038.1| 437|Caenorhabditis elegans Hypothetical
protein Y62F5A.10 protein.
Length = 437
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 251 EDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 361
EDVA+A + + + ID C+A K N + T W
Sbjct: 135 EDVAVAYIGKLDASQTRPEYIDVCVATKANIENCTVW 171
>Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical
protein F10G8.5 protein.
Length = 190
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 179 RTIEEVCSMYADQIT--ADDQGREIQEDVALAKVPNAEDKLKVEKLIDACLANK 334
+ IE + M ++T ADD R+ + + N + +L +++ +D CLA+K
Sbjct: 125 KIIEAIYEMLGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVDGCLADK 178
>Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical
protein B0024.3 protein.
Length = 254
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 6 RGIMKTFI-VFVVCVVLAQALTDEQKEN 86
+GI+ T I VFVVCV+ + + D +K N
Sbjct: 195 KGILFTIIAVFVVCVMCSSMIEDNRKNN 222
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 319 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 441
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 319 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 441
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 105 DCLSETKADEQLVNKLKTGDFKTENEPLK 191
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 105 DCLSETKADEQLVNKLKTGDFKTENEPLK 191
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calcium
binding protein protein.
Length = 190
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 179 RTIEEVCSMYADQIT--ADDQGREIQEDVALAKVPNAEDKLKVEKLIDACLANK 334
+ IE + M ++T ADD R+ + + N + +L +++ +D CLA+K
Sbjct: 125 KIIEAIYEMLGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVDGCLADK 178
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 27 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 179
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 319 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 441
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 39 VCVVLAQALTDEQKENLKKHRADCLSETKA--DEQLVNKLKTGDFKTENE 182
V + LTD Q++NLK ++ ++ET + L N + +G F E E
Sbjct: 330 VVTTYEEKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 27 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 179
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical
protein C46E10.3 protein.
Length = 392
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +2
Query: 245 IQEDVALAKVPNAEDKLKV---EKLIDACL--ANKGNSPHQT 355
+Q+D+ LA + N +DK + EKL+ CL +KG+ P +
Sbjct: 287 LQDDLKLAGIKNMQDKQNLYVYEKLVKKCLFHPSKGDCPQDS 328
>Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical
protein K08E3.2 protein.
Length = 276
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 69 DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKF 248
DE+K++ K R D E K D+Q +K K + + P + + + +L+ K+
Sbjct: 137 DEKKDDEKDERNDEKKEEKKDDQKDDK-KAKSMISVDAPELIFERTITSQKKLLLKNLTA 195
Query: 249 KKTSLWLKC 275
KK +KC
Sbjct: 196 KKVMFKIKC 204
>Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical
protein C48D1.3 protein.
Length = 576
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 240 GKFKKTSLWLKCLML 284
G FK+TSLW+ C++L
Sbjct: 228 GGFKETSLWIDCMLL 242
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +3
Query: 54 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 233
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324
Query: 234 KDGKFKK 254
KD K K+
Sbjct: 7325 KDDKLKQ 7331
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +3
Query: 54 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 233
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 234 KDGKFKK 254
KD K K+
Sbjct: 7345 KDDKLKQ 7351
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +3
Query: 54 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 233
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 234 KDGKFKK 254
KD K K+
Sbjct: 7345 KDDKLKQ 7351
>AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity
choline transporterCHO-1 protein.
Length = 576
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 240 GKFKKTSLWLKCLML 284
G FK+TSLW+ C++L
Sbjct: 228 GGFKETSLWIDCMLL 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,819
Number of Sequences: 27780
Number of extensions: 273860
Number of successful extensions: 919
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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