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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0396
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    31   0.51 
U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical p...    30   1.2  
U53151-5|AAB37068.1|  476|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    29   2.7  
AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z80216-5|CAB02282.1|  190|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z71178-3|CAA94876.2|  254|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   6.3  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   6.3  
L33681-1|AAA85632.1|  190|Caenorhabditis elegans neuronal calciu...    28   6.3  
AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal tr...    28   6.3  
AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA ...    28   6.3  
AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation su...    28   6.3  
AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z81568-2|CAB04590.1|  276|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   8.3  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   8.3  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   8.3  
AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity...    27   8.3  

>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 470 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 357
           RPS LT   YG+ GL+  +  K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197


>U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical
           protein ZC404.11 protein.
          Length = 320

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -3

Query: 277 RHFSQSDVFLNFPSLVISCDLISIHRAYFFNGS-FSVLKSPVFSLFT 140
           R ++   VFL+   L ++ D + +  + FF+GS F +L S + S+F+
Sbjct: 150 RVYADGSVFLDISPLSLANDCLFLKTSIFFSGSCFKILPSILMSMFS 196


>U53151-5|AAB37068.1|  476|Caenorhabditis elegans Hypothetical
           protein T05B11.4 protein.
          Length = 476

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -3

Query: 256 VFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 80
           +F    + +  C L+ + R Y F     +L   VF +FTN    F S R S  C+ + S
Sbjct: 5   IFFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = +3

Query: 39  VCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 218
           +C +LA ALT + +E   KH   C    K  E LVN L  G+   EN         +L+K
Sbjct: 763 LCGILA-ALTRDLREKFNKH---CW---KTIEILVNILDLGERVAENMEAAYLCFSILVK 815

Query: 219 SQLMTKDGKFKKT 257
            Q      + KKT
Sbjct: 816 MQASFLSKQLKKT 828


>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 251 EDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 361
           EDVA+A +   +      + ID C+A K N  + T W
Sbjct: 135 EDVAVAYIGKLDASQTRPEYIDVCVATKANIENCTVW 171


>Z80216-5|CAB02282.1|  190|Caenorhabditis elegans Hypothetical
           protein F10G8.5 protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 179 RTIEEVCSMYADQIT--ADDQGREIQEDVALAKVPNAEDKLKVEKLIDACLANK 334
           + IE +  M   ++T  ADD  R+  + +      N + +L +++ +D CLA+K
Sbjct: 125 KIIEAIYEMLGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVDGCLADK 178


>Z71178-3|CAA94876.2|  254|Caenorhabditis elegans Hypothetical
           protein B0024.3 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 6   RGIMKTFI-VFVVCVVLAQALTDEQKEN 86
           +GI+ T I VFVVCV+ +  + D +K N
Sbjct: 195 KGILFTIIAVFVVCVMCSSMIEDNRKNN 222


>Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 319 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 441
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 319 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 441
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 105 DCLSETKADEQLVNKLKTGDFKTENEPLK 191
           D +SE  A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 105 DCLSETKADEQLVNKLKTGDFKTENEPLK 191
           D +SE  A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455


>L33681-1|AAA85632.1|  190|Caenorhabditis elegans neuronal calcium
           binding protein protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 179 RTIEEVCSMYADQIT--ADDQGREIQEDVALAKVPNAEDKLKVEKLIDACLANK 334
           + IE +  M   ++T  ADD  R+  + +      N + +L +++ +D CLA+K
Sbjct: 125 KIIEAIYEMLGPEVTKSADDSPRKRAKMIFEKMDVNNDKELTLKEFVDGCLADK 178


>AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal
           triglyceride transferprotein protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 27  IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 179
           +   V V LA    DE K+NL+KH  D   ++ K +E  V  LK    F+TE+
Sbjct: 10  LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62


>AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA
           binding protein SYM-2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 319 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 441
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical
           protein M4.1 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 39  VCVVLAQALTDEQKENLKKHRADCLSETKA--DEQLVNKLKTGDFKTENE 182
           V     + LTD Q++NLK  ++  ++ET +     L N + +G F  E E
Sbjct: 330 VVTTYEEKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379


>AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation
           suppressor of clk-1protein 4 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 27  IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 179
           +   V V LA    DE K+NL+KH  D   ++ K +E  V  LK    F+TE+
Sbjct: 10  LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62


>AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical
           protein C46E10.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = +2

Query: 245 IQEDVALAKVPNAEDKLKV---EKLIDACL--ANKGNSPHQT 355
           +Q+D+ LA + N +DK  +   EKL+  CL   +KG+ P  +
Sbjct: 287 LQDDLKLAGIKNMQDKQNLYVYEKLVKKCLFHPSKGDCPQDS 328


>Z81568-2|CAB04590.1|  276|Caenorhabditis elegans Hypothetical
           protein K08E3.2 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 69  DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKF 248
           DE+K++ K  R D   E K D+Q  +K K     + + P   +   +  + +L+ K+   
Sbjct: 137 DEKKDDEKDERNDEKKEEKKDDQKDDK-KAKSMISVDAPELIFERTITSQKKLLLKNLTA 195

Query: 249 KKTSLWLKC 275
           KK    +KC
Sbjct: 196 KKVMFKIKC 204


>Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical
           protein C48D1.3 protein.
          Length = 576

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 240 GKFKKTSLWLKCLML 284
           G FK+TSLW+ C++L
Sbjct: 228 GGFKETSLWIDCMLL 242


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +3

Query: 54   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 233
            A A   ++K++  KH AD   + + D++L  +      K +++ LKK A   L K     
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324

Query: 234  KDGKFKK 254
            KD K K+
Sbjct: 7325 KDDKLKQ 7331


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +3

Query: 54   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 233
            A A   ++K++  KH AD   + + D++L  +      K +++ LKK A   L K     
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344

Query: 234  KDGKFKK 254
            KD K K+
Sbjct: 7345 KDDKLKQ 7351


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +3

Query: 54   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 233
            A A   ++K++  KH AD   + + D++L  +      K +++ LKK A   L K     
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344

Query: 234  KDGKFKK 254
            KD K K+
Sbjct: 7345 KDDKLKQ 7351


>AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity
           choline transporterCHO-1 protein.
          Length = 576

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 240 GKFKKTSLWLKCLML 284
           G FK+TSLW+ C++L
Sbjct: 228 GGFKETSLWIDCMLL 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,819
Number of Sequences: 27780
Number of extensions: 273860
Number of successful extensions: 919
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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