Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0395
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.61
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.61
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 27 3.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.3
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 27 3.3
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 4.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.7
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.7
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 26 5.7
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom... 25 10.0
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.1 bits (62), Expect = 0.61
Identities = 26/95 (27%), Positives = 45/95 (47%)
Frame = +2
Query: 221 SSHTTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLN 400
SS ++ +++PS S+T + P + SS SSS+ S +++SS+ S +
Sbjct: 130 SSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189
Query: 401 TSRRNS*VSKPIRFVASRVTPRTLSGS*PRSTGKT 505
+S +S S +S V P T S S S+ +
Sbjct: 190 SSSSSSSSSSSSSSSSSSV-PITSSTSSSHSSSSS 223
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +2
Query: 221 SSHTTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLN 400
SS ++ +++ S S++ S + SS SSS+ + ++TSS+ S +
Sbjct: 164 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSS 223
Query: 401 TSRRNS*VSKP 433
+S +S S+P
Sbjct: 224 SSSSSSSSSRP 234
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 254 TTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS 418
++TPS S++ S P + +SS SSS+ S K+++SS+ ++S +S
Sbjct: 151 SSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSS 205
Score = 28.7 bits (61), Expect = 0.81
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +2
Query: 221 SSHTTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRS-- 394
SS + +++PS S+++S K + SS + SSS+ S +++SS+ +S
Sbjct: 151 SSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSA 210
Query: 395 LNTSRRNS*VSKPIRFVASRVTPRTLSGS 481
+S ++S F+ S TP + S S
Sbjct: 211 SPSSSKSSSKFSSSSFITS-TTPASSSSS 238
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.3
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 23 ANELKALASLYLKRSY-HYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTK 199
A + ALAS ++ + + L S S FN Y + +L++ E + ++KHV K
Sbjct: 630 AEDQNALASSNIETEFLNALESVSEFNEYGPVLKSSPSPI-ELTEQETEFVVKVVKHVFK 688
Query: 200 RGGKMDFSSHTTL 238
+ F H TL
Sbjct: 689 DHLVVQFQLHNTL 701
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +2
Query: 218 FSSHTTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSL 397
FSS + ++T + S++ S + SSL SSS+ KS SS +
Sbjct: 368 FSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNS 427
Query: 398 NTSRRNS 418
+SR +S
Sbjct: 428 TSSRSSS 434
Score = 25.4 bits (53), Expect = 7.6
Identities = 26/92 (28%), Positives = 41/92 (44%)
Frame = +2
Query: 221 SSHTTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLN 400
SS ++ +T S S + S + T SS SSS+ ++ SST S +
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST---ISSSSSSPSSSSFSSTTSSSKS 364
Query: 401 TSRRNS*VSKPIRFVASRVTPRTLSGS*PRST 496
+S +S VS +S +T + S S P S+
Sbjct: 365 SSSFSSTVSSSSSTSSSTLTSSSSSSSRPASS 396
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.3
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Frame = +2
Query: 47 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGL--IKHVTKRGGKMDF 220
S+Y+ +YH S + F+ + R +K ++ ++ S + I + T +G + F
Sbjct: 97 SIYIPSNYHKSFSPNTFSGFNVKRSA-SKSPKRSANGSTSEDISIEGSPSETAKGARSSF 155
Query: 221 SSH---TTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLR 391
+S+ + ++ S S P + +S+ P +ST S T + R
Sbjct: 156 NSNFRTFDIGSERRRRILEASQDSSRPGRYSYRTKSASPALIDTSTLDSRLNFTMGRLER 215
Query: 392 SLNTSRRNS 418
S+ +N+
Sbjct: 216 SIAQLSKNT 224
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 356 TSLWMKKILSASCFCVSKALARAPISWPTS 267
+++W I A C C++ ++A ++PTS
Sbjct: 95 SAVWCWLIAGAGCMCIALSVAELVSAYPTS 124
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.7
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +2
Query: 254 TTTPSRSATRSEPWPKPWTRRSSLPRGFSS--STGKSLKTATSSTMLRSLNTSRRNS*VS 427
+T S SAT S +S SS ST S +SS SLN++ + S
Sbjct: 183 STAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATS 242
Query: 428 KPIRFVASRVTPRTLSGS 481
I S TP T S S
Sbjct: 243 SSISSTVSSSTPLTSSNS 260
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 5.7
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 191 VTKRGGKMDFSSHTTLKGDKGTTTPSRSATRSEPWPKP-WTRRSSLPRGFSSSTGKSLKT 367
VT K FSS + + P R +T KP W+RR + GFSS + +
Sbjct: 625 VTLPNSKKRFSSFS----GSSSKLPVRPSTALTDKRKPSWSRRLAAAIGFSSGSPEKKHV 680
Query: 368 ATSSTMLRSLNTSR 409
TSS + SR
Sbjct: 681 ITSSDAGHQRSKSR 694
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 5.7
Identities = 22/89 (24%), Positives = 36/89 (40%)
Frame = +2
Query: 149 SDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLP 328
+DD E G TKR D SS + +GD + SR+ + ++R SL
Sbjct: 234 ADDEPEDIWGPSSKSTKRRDSADRSSSYSRRGDSYRSNRSRAHDDDDEDDYSFSRSKSLS 293
Query: 329 RGFSSSTGKSLKTATSSTMLRSLNTSRRN 415
R + + +S K + + RR+
Sbjct: 294 RKTAGGSLRSSKMDNRRSKYADTPSPRRS 322
>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +1
Query: 280 EIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGH 459
++G++ + Q + RI R+ T +LLHD+E Y +++++ Q + G
Sbjct: 159 QVGSIVEG--PQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQKSKMSGRKGQ 216
Query: 460 TSDLKR 477
L++
Sbjct: 217 YKKLQQ 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,057
Number of Sequences: 5004
Number of extensions: 46776
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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