Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0395
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 40 0.001
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 37 0.013
07_03_0808 - 21668100-21669092 32 0.36
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 32 0.48
08_02_0829 - 21604845-21605588 31 0.84
09_06_0294 + 22089915-22091333 31 1.1
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 30 1.9
02_03_0259 + 16934848-16935599,16935659-16935911 30 1.9
12_02_0349 - 17820352-17821238,17822976-17823363 29 2.6
03_02_0497 - 8891852-8892270,8892368-8892473,8892573-8892911,889... 29 2.6
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 29 4.5
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 29 4.5
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 28 5.9
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 28 5.9
10_01_0103 + 1253613-1253783,1253994-1254758,1254860-1255228 28 7.8
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 28 7.8
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +2
Query: 41 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDF 220
L S+ SY Y +YF+ +GFAK F++ SD+ + LIK+ RGG++
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRL 189
Query: 221 SSHTT 235
S T
Sbjct: 190 QSIVT 194
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 65 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 235
SY Y +YF+ +GFAK F++ SD+ + L+K+ RGG++ S T
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVT 162
>07_03_0808 - 21668100-21669092
Length = 330
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +2
Query: 263 PSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRF 442
PS + R+ P P + R S P FSS+TG ++ ST ++ S++ + S P
Sbjct: 159 PSTAPRRTPPPPGSASPRPSSPESFSSATGARFRSTCFSTRYSAI-PSKKEARSSSP--- 214
Query: 443 VASRVTPR 466
ASR PR
Sbjct: 215 -ASREPPR 221
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 197 KRGGKMDFSSHTTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATS 376
K+G K + T +KGD+ T T + P + S+P+ S + GK L T
Sbjct: 630 KKGKKRNGPESTKIKGDQKETHNEEEPTSEKKQPVSAKIKKSVPKRISGNKGKKLDTGKG 689
Query: 377 STMLRS 394
R+
Sbjct: 690 EKRKRN 695
>08_02_0829 - 21604845-21605588
Length = 247
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 266 SRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNT 403
SR+++ +E W R ++ G S+ST +++KT TS+ M+ T
Sbjct: 165 SRASSTAERWDINKKPRPAVGSGKSNSTSRTMKTTTSAQMISKSQT 210
>09_06_0294 + 22089915-22091333
Length = 472
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 245 DKGTTTPSRSATRSEP-WPKPWTRRSSLPRGFSSSTGK 355
D T P+ + T P WP PW S+ G+ ++TG+
Sbjct: 175 DSTLTLPTMNPTSYPPAWPAPWIELSTTGLGYDTATGE 212
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/100 (29%), Positives = 40/100 (40%)
Frame = +2
Query: 119 EGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGTTTPSRSATRSEPWP 298
EG K F K D+ + L H R K+D H + + + SR + R+ P
Sbjct: 254 EGTGKGFNKSLDEVARR---LAIHAGGRDDKVDSRCHAYSQSTERCKSVSRPS-RAVTLP 309
Query: 299 KPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS 418
P RSS P SS T ++ S + R SR S
Sbjct: 310 VPVLHRSSSPSKASSVTSSISRSFQSPSRTRPSTPSRSQS 349
>02_03_0259 + 16934848-16935599,16935659-16935911
Length = 334
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 248 KGTTTPSRSATRSEP-WPKPWTRRSSLPRGFSSST 349
+ + TP +++R P WP P TRR P + ST
Sbjct: 228 RSSPTPRAASSRPAPRWPSPLTRRDDAPFSVAGST 262
>12_02_0349 - 17820352-17821238,17822976-17823363
Length = 424
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/89 (28%), Positives = 39/89 (43%)
Frame = +1
Query: 238 ERRQGHNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEF 417
+RR+ E+ E A A+A + Q+QL E+ F V L+H+AE E+
Sbjct: 221 QRRELDAVRAELDGERRACAEAAEYQRQLEEQGEFDREAVRLAMQLVHEAE----TEKHA 276
Query: 418 VSQQADTIRSLAGHTSDLKRXITEINGKD 504
+ +Q D R + H D + T D
Sbjct: 277 LQRQLDAFR-VKAHLYDYEAAATAAAATD 304
>03_02_0497 -
8891852-8892270,8892368-8892473,8892573-8892911,
8893065-8893415
Length = 404
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 349 CG*RKSSRQAASACPRLWPGLRSRGRPRRCSCALVAFQCG 230
CG R+ + SACP PG G C+ VA CG
Sbjct: 84 CGRRRDMEDSVSACPGFLPGHHFFGVFDGHGCSHVATSCG 123
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 165 RKPLVS*STSLRGVGRWTSRVTPH*KATRAQLHRRGRPRDRSPGQSLGHAEAACREDFLH 344
R+P +LR R +R + TR + +GRP R+ + A+ R
Sbjct: 25 RRPTALPGPALRVTPRINARAAGRDRRTRREDRDQGRPGGRTEQPAPAAGLASSRRSMPR 84
Query: 345 PQGSH*KQRPPPR 383
+GS QR PR
Sbjct: 85 SRGSELPQRASPR 97
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 251 GTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRN 415
G T + +A S W RR S PR +S + S + SLNT R++
Sbjct: 1065 GARTSTTAAGASPTTSSIWGRRPSAPRTAASPSSSSTSLLQICSKSESLNTYRKS 1119
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 264 RRGRPRDRSPGQSLGH 311
RRGRPR +PG LGH
Sbjct: 184 RRGRPRTPTPGSYLGH 199
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Frame = +2
Query: 230 TTLKGDKGTTTPSRSAT-RSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTS 406
+T +G +T+P AT R P W R + + S++ L S
Sbjct: 204 STPRGSSASTSPRTPATARGAPAGAAWPRHRDRTQALHVFGAAAAAGQPSASSL----VS 259
Query: 407 RRNS*VSKPIRFVASRVTPRTLSGS*PRSTGKTC 508
R ++ P R TP S PRST C
Sbjct: 260 RSRPSLTAPSSGALQRATPGAAGTSSPRSTAPAC 293
>10_01_0103 + 1253613-1253783,1253994-1254758,1254860-1255228
Length = 434
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 206 GKMDFSSHTTLKGDKGTTTPSRSATRSEPWPKP-WTRRSSLPRGFSSSTGKSLKTA 370
G++ ++K K TT +TR P+P P TR SS ++T ++ + A
Sbjct: 182 GRITGQLEHSVKNVKAITTRGGKSTRDPPYPNPAGTRSSSSQEALPNNTAETEEVA 237
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 498 PVDLGYXPLKVRGVTREATNRIG-LLTHEFLLDVLSDLSIVEEVAVFSDFPVDEENPLGK 322
P LG P V + + +G ++ VL L + V SD+ ++E+NPLG
Sbjct: 453 PAALGLDPTVANSVHQVINSSLGSVIPRNLQKSVLEGLFSIGRAQV-SDYILNEKNPLGS 511
Query: 321 LLL 313
L L
Sbjct: 512 LRL 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,199,696
Number of Sequences: 37544
Number of extensions: 346387
Number of successful extensions: 1112
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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