Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0395
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 34 0.081
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 33 0.25
Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical p... 32 0.32
AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical... 32 0.43
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 31 0.57
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 31 0.57
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 29 2.3
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 29 2.3
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 28 5.3
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 28 5.3
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 28 5.3
AC084153-4|AAK84598.2| 836|Caenorhabditis elegans Hypothetical ... 28 5.3
U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical pr... 28 7.0
AC006633-5|AAO21429.1| 506|Caenorhabditis elegans Prion-like-(q... 28 7.0
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 28 7.0
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 27 9.2
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 34.3 bits (75), Expect = 0.081
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 379 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 477
+DA +T YI+E+++ +Q +I A H +++KR
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR 153
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 56 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 214
L SY YL +++F+ AK F++ SD+ L++ RGG++
Sbjct: 24 LYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGRV 76
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +1
Query: 268 EVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRS 447
E G + A AL +K E + +H ++D A +T +IEE+++ +Q +I
Sbjct: 88 EWGTALKAFEAALALEKFNNESLLKLHSTAGNHND----AHLTDFIEEKYLDEQVKSINE 143
Query: 448 LAGHTSDLKR 477
A ++LKR
Sbjct: 144 FARMVANLKR 153
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 47 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 214
++ L SY YL + YF+ AK F++ SD+ E L++ RGG++
Sbjct: 21 NIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGRV 76
>Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical
protein Y57G11C.51 protein.
Length = 160
Score = 32.3 bits (70), Expect = 0.32
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +2
Query: 140 RKLSDDS-WEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGTTTPSRSATRSEPWPKPWTRR 316
++LSD WE+ K V + + + S+ D G + + + R P P P T
Sbjct: 70 KRLSDKKRWEELNDAAKEVVRANAR-EASARRRAGRDAGLSANPKRSPRWSPQPDPSTPS 128
Query: 317 SSLPRGFSSSTGKSLKTATSSTMLRS 394
SS SSS S T +ST RS
Sbjct: 129 SSTSSSTSSSPSSS-STPLTSTQRRS 153
>AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical
protein Y38H6C.14 protein.
Length = 814
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 191 VTKRGGKMDFSSHTTLKGDK-GTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKT 367
V +G + F S K +K G++TPS S + SE + + RSS P+ S++ KS +
Sbjct: 748 VVDKGYEESFESED--KSEKSGSSTPSESGSGSESENESRSSRSSKPKSSKSTSSKSSSS 805
Query: 368 ATSST 382
++S+
Sbjct: 806 RSTSS 810
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 31.5 bits (68), Expect = 0.57
Identities = 26/87 (29%), Positives = 36/87 (41%)
Frame = +2
Query: 221 SSHTTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLN 400
S TT+ +G+T+P S T E ++ S+ G + ST T + ST S
Sbjct: 902 SQSTTIGSTQGSTSPGISTTSEE----MTSQGSTQTPGSTGSTVTQPSTVSDSTSSGSTV 957
Query: 401 TSRRNS*VSKPIRFVASRVTPRTLSGS 481
T S PI + P T SGS
Sbjct: 958 TVGSTEGSSSPIPSTSQNTNPSTSSGS 984
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 349 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 477
+ V K ++LH Q EE F +Q TIR A +DLK+
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKK 83
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 209 KMDFSSHTTLKGDKGTTTPSRSATRSEPWPKPWTRRSSLPRGFSSS-TGKSLKTATSSTM 385
K+D + T TTPS++ + PKP T ++ +++ T + T TS+T
Sbjct: 492 KIDVPTTTVQTSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTT 551
Query: 386 LRSLNTS 406
L S S
Sbjct: 552 LPSTTAS 558
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 262 TVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQ-ADT 438
TVE H++ ++A ++ T + E + FI + + + L+ A T + E S++ A+
Sbjct: 639 TVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALKTGWAAMEQASKKDAEV 698
Query: 439 IRSLAGHTSDLKRXITEING 498
IRS + + +++ +G
Sbjct: 699 IRSHVDKLASIAEQLSKRHG 718
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 251 GTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNT-SRRNS*VS 427
G+ + +S +R P P +R+ S G +S T + +ATS+T S ++ + R+
Sbjct: 318 GSPSTRKSPSRKSASPTP-SRKGSSAGGAASGTTGASASATSATSGGSASSDASRDKYTR 376
Query: 428 KPIRFVASRVTPRTLSGS 481
PI ASR + GS
Sbjct: 377 PPIVLEASRSQTGRIGGS 394
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 251 GTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNT-SRRNS*VS 427
G+ + +S +R P P +R+ S G +S T + +ATS+T S ++ + R+
Sbjct: 318 GSPSTRKSPSRKSASPTP-SRKGSSAGGAASGTTGASASATSATSGGSASSDASRDKYTR 376
Query: 428 KPIRFVASRVTPRTLSGS 481
PI ASR + GS
Sbjct: 377 PPIVLEASRSQTGRIGGS 394
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 251 GTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNT-SRRNS*VS 427
G+ + +S +R P P +R+ S G +S T + +ATS+T S ++ + R+
Sbjct: 318 GSPSTRKSPSRKSASPTP-SRKGSSAGGAASGTTGASASATSATSGGSASSDASRDKYTR 376
Query: 428 KPIRFVASRVTPRTLSGS 481
PI ASR + GS
Sbjct: 377 PPIVLEASRSQTGRIGGS 394
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 251 GTTTPSRSATRSEPWPKPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNT-SRRNS*VS 427
G+ + +S +R P P +R+ S G +S T + +ATS+T S ++ + R+
Sbjct: 318 GSPSTRKSPSRKSASPTP-SRKGSSAGGAASGTTGASASATSATSGGSASSDASRDKYTR 376
Query: 428 KPIRFVASRVTPRTLSGS 481
PI ASR + GS
Sbjct: 377 PPIVLEASRSQTGRIGGS 394
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 194 TKRGGKMDFSSHTTLKGDKGTT---TPSRSATRSEPWPKPWTRRSSLPRGFSSS-TGKSL 361
TK +D S T TT TPS++ + PKP T ++ +++ T +
Sbjct: 325 TKSSAHLDNSDVPTTTVQTSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKP 384
Query: 362 KTATSSTMLRSLNTS 406
T TS+T L S S
Sbjct: 385 TTVTSTTTLPSTTAS 399
>AC084153-4|AAK84598.2| 836|Caenorhabditis elegans Hypothetical
protein Y22D7AL.9 protein.
Length = 836
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = -3
Query: 510 EQVFPVDLGYXPLKVRGVTREATNRIGLLTHEFLLDVLSDLSIVEEVAVFSDFPVDEENP 331
E+V + Y L+ G++ EA + +L EF L +L + +F D ++
Sbjct: 492 EKVPYISAKYRWLQSTGISEEAEKCLKML--EFWLKTDQNLDSKAKSLIFEDLSLENRPK 549
Query: 330 LGKLLLRVQGFGQGSD 283
+GKL+ Q + D
Sbjct: 550 IGKLIALEQALTEAQD 565
>U40933-2|AAL27242.1| 158|Caenorhabditis elegans Hypothetical
protein F20D12.7 protein.
Length = 158
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 139 EELRESFPVRLVVVEVGGRQEIMVGTFQIQ*G 44
EE+ E V LV++ +GGR +VGT ++ G
Sbjct: 87 EEITEPSSVLLVMITMGGRMANVVGTMKLYKG 118
>AC006633-5|AAO21429.1| 506|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform b protein.
Length = 506
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 243 ATRAQLHRRGRPRDRSPGQSLGHAEAACREDFLHPQGSH*KQRP 374
A R+ +H R RPR +P ++ H++ R Q S RP
Sbjct: 324 AARSSMHNRNRPRMYNPPPAVSHSQGPSRSVSRMSQDSLFYSRP 367
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 243 ATRAQLHRRGRPRDRSPGQSLGHAEAACREDFLHPQGSH*KQRP 374
A R+ +H R RPR +P ++ H++ R Q S RP
Sbjct: 324 AARSSMHNRNRPRMYNPPPAVSHSQGPSRSVSRMSQDSLFYSRP 367
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 TTPSRSATRSEPWPKPWTRRSSLPRGFSSS-TGKSLKTATSSTMLRSLNTS 406
TTPS++ + PKP T ++ +++ T + T TS+T L S S
Sbjct: 389 TTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTAS 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,147,681
Number of Sequences: 27780
Number of extensions: 272130
Number of successful extensions: 956
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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