Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0389
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    29   0.60 
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    26   5.6  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   5.6  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    25   9.8  

>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 87  NETDQLIDSSTQNYNVRDENTDNMNEMMKSATEHDP 194
           ++TD ++++S Q  +V  +N D  +E++K     DP
Sbjct: 261 SDTDNVVENSLQTEDVYSQNQDESSEVVKELNGIDP 296


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 156 MNEMMKSATEHDPLDKMLECCEFFKKLFGNKTTVQQ 263
           M+  + SA E DP + + E    F++ +G KTT ++
Sbjct: 342 MDTSVLSAIEVDPFENLDETQTLFEETYGLKTTEEE 377


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -2

Query: 342 HANVIAKTGIFDSFSYSP----AVICSAITF 262
           H+N++  +  F  FSYSP     V+C+ + F
Sbjct: 122 HSNIVVNSLTFCPFSYSPQSKIVVLCNTLNF 152


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 390 LWHATKTNNIEPTANKHANVIAKT 319
           ++HAT    + P+ NKH+N    T
Sbjct: 549 IFHATCLQEVRPSENKHSNTNTST 572


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 84  INETDQLIDSSTQNYNVRDENTDNMNEMMKSATEH 188
           INE  +L+ +   N      NT N +  ++ A EH
Sbjct: 200 INEQGELVTNIEYNVGNTSTNTKNASRQLQIANEH 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,140
Number of Sequences: 5004
Number of extensions: 47498
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)