Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0389
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0754 - 6816789-6816886,6816922-6817722,6818377-6819058           29   2.5  
01_06_1142 + 34856497-34856698,34857852-34858402                       29   3.3  
03_05_0977 + 29355824-29357056                                         28   7.7  

>12_01_0754 - 6816789-6816886,6816922-6817722,6818377-6819058
          Length = 526

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 102 LIDSSTQNYNVRDENTDNMNEMMKSATEHDPLDKMLECCEFFKKLFGNKTTVQ 260
           L D S +   +  + T ++ +     TE  P  K+    +F+KK F  KTT++
Sbjct: 201 LPDVSNKIAAMGSDGTASLRQNFLGETEISPTQKLETMNDFYKKYFNTKTTLE 253


>01_06_1142 + 34856497-34856698,34857852-34858402
          Length = 250

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 120 QNYNVRDENTDNMNEMMKSATEHDPLDKML 209
           QN  +RD N++ ++EM    TEH+ + +M+
Sbjct: 184 QNIAMRDHNSERISEMHHFDTEHEQIRRMM 213


>03_05_0977 + 29355824-29357056
          Length = 410

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 108 DSSTQNYNVRDENTDNMNEMMK-SATEHDPLDK 203
           DSST +  + DE  + M + MK    + DP+D+
Sbjct: 79  DSSTLDERIEDEENEEMEQEMKHDENDEDPIDE 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,722
Number of Sequences: 37544
Number of extensions: 256696
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)