Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0389
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   3.4  
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_45351| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1090

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 189 HVLLHSSSFRSCCLYSHHVRYNSVCYC 109
           +VLLHSS  R  CL  HH     +C C
Sbjct: 352 NVLLHSSMPREVCLCMHHENVKCLCDC 378


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 153 CLYSHHVRYNSVCYCQLADRFHLCFYFLD*VYFHYSDFVCSVCYC 19
           C   ++  Y   CYC     +  C+Y+    Y HY  + C  C C
Sbjct: 482 CYCYYYCYYYCYCYCYYCCYYCYCYYY----YHHY--YCCYYCCC 520


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 378 TKTNNIEPTANKHANVIAKTGIFDSFSYSPAVICSA 271
           T TNNI  TANK A  +  T    +F+Y P  I S+
Sbjct: 16  TNTNNIATTANKIATTVTTTTA--NFTYYPHFISSS 49


>SB_45351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +2

Query: 209 GVL*VLQEIIWKQNHCTTNVIAEHITAGEYENESNIPVFAITLACLLAVGSMLFVFVACH 388
           GVL ++Q +    N CT    A H+ A    N  ++   ++   C  +V + L V+    
Sbjct: 5   GVLHIIQTVRI-HNPCTLRTPASHVRAHNIFNIVSLAPLSVRTECASSVRTELTVYSLSG 63

Query: 389 KLSEMFQSGRYYL 427
           K+    + G Y +
Sbjct: 64  KVEGRLRCGSYIM 76


>SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 219 HNTPTFYLTGHVLLHSSSFRSCCLYSHHVRYNSVCYCQ 106
           H    FY +G   LH+  +  CC  ++H  +   CY Q
Sbjct: 134 HFLQGFYRSGDKWLHNIEYGKCCKPANHPHWWGHCYNQ 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,451,299
Number of Sequences: 59808
Number of extensions: 347275
Number of successful extensions: 909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)