Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0389
         (667 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    25   2.8  
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    25   2.8  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   5.0  
AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled ...    23   8.7  
AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.      23   8.7  
AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant r...    23   8.7  

>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 387 WHATKTNNIEPTANKHANVIAKTGIFDSFSYSPAVICSAITFVVQWFCFQI 235
           WH+ K +   PTAN +  ++A          S A+ C   T++    C ++
Sbjct: 81  WHSPKFHAYFPTANSYPAIVAD-------MLSGAIACIGFTWIASPACTEL 124


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 387 WHATKTNNIEPTANKHANVIAKTGIFDSFSYSPAVICSAITFVVQWFCFQI 235
           WH+ K +   PTAN +  ++A          S A+ C   T++    C ++
Sbjct: 112 WHSPKFHAYFPTANSYPAIVAD-------MLSGAIACIGFTWIASPACTEL 155


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 272 AEHITAGEYENESNIPVFAITLACLLAVGSMLFVFVAC 385
           A+H+  G+      IP+ AI  A    + + L VF  C
Sbjct: 402 ADHLKLGKAPGPDGIPIEAIKAAIKAYLEAFLSVFQNC 439


>AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled
           receptor 4 protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 188 MFCCTLHHFVHVVCILITYVIILCATVN 105
           +FC    +F+ ++ I   Y +ILC   N
Sbjct: 245 LFCVIAMYFLPLMIISGAYTVILCEISN 272


>AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 156 CCLYSHHVRYNSVCY 112
           CC Y H +R +  CY
Sbjct: 187 CCRYWHSLRLSYACY 201


>AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant
           receptor Or4 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 316 YIRFILVFTGRYMFCDYIC 260
           YI F+L+     + C Y+C
Sbjct: 186 YITFVLIMLPVVVMCGYVC 204


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,650
Number of Sequences: 2352
Number of extensions: 12581
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)