Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0389
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    31   0.56 
Z73969-9|CAE17694.1|  244|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    27   9.1  
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     27   9.1  
AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.     27   9.1  
AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    27   9.1  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    27   9.1  

>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 162 RSCCLYSHHVRYNSVCYCQLADRFH 88
           R CC YSHH R    CYC      H
Sbjct: 193 RPCCPYSHHRRLCDPCYCSNRPESH 217


>Z73969-9|CAE17694.1|  244|Caenorhabditis elegans Hypothetical
           protein C12D8.13 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 390 LWHATKTNNIEPTANKHANVIAKTGIFDSFSYSPAVICSAI 268
           ++   +T NIEP +N    +     IF  FSY  +V  S++
Sbjct: 180 IFGTNETRNIEPDSNNEVEIWMTFCIFGPFSYPYSVFISSL 220


>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +2

Query: 191 PVR*NVGVL*VLQEIIWKQNHCTTNVIAEHITAGEYENESNIPVFAITLACLL 349
           P++ N+ ++ +L+ +    N   TN     +T G+ ENES +P+F  +L+ ++
Sbjct: 214 PLKTNLEMVQILKHLNGTSNVEITNYQQARLT-GKNENESPLPLFKSSLSAII 265


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +2

Query: 191 PVR*NVGVL*VLQEIIWKQNHCTTNVIAEHITAGEYENESNIPVFAITLACLL 349
           P++ N+ ++ +L+ +    N   TN     +T G+ ENES +P+F  +L+ ++
Sbjct: 214 PLKTNLEMVQILKHLNGTSNVEITNYQQARLT-GKNENESPLPLFKSSLSAII 265


>AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +2

Query: 191 PVR*NVGVL*VLQEIIWKQNHCTTNVIAEHITAGEYENESNIPVFAITLACLL 349
           P++ N+ ++ +L+ +    N   TN     +T G+ ENES +P+F  +L+ ++
Sbjct: 130 PLKTNLEMVQILKHLNGTSNVEITNYQQARLT-GKNENESPLPLFKSSLSAII 181


>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 294 SPAVICSAIT-FVVQWFCFQIIS*RTHNTPTFYLTGHVLLHSSSFRSCCLYSHHVR 130
           S A++C  I  F+  WFC+   +          +TG + LH+  +R+ CL     R
Sbjct: 72  SMALLCDGICKFIGPWFCYHCYNLLL---TMITVTGLINLHTLCYRTMCLKHFETR 124


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 294 SPAVICSAIT-FVVQWFCFQIIS*RTHNTPTFYLTGHVLLHSSSFRSCCLYSHHVR 130
           S A++C  I  F+  WFC+   +          +TG + LH+  +R+ CL     R
Sbjct: 72  SMALLCDGICKFIGPWFCYHCYNLLL---TMITVTGLINLHTLCYRTMCLKHFETR 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,002
Number of Sequences: 27780
Number of extensions: 270522
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)