Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0389
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 466 SIMLRRTYXLKRTXXVSLTVRIXENLFLITNNQXPEQIDQM 588
           +I+LRR Y +  T  V+LT+ +   + L+T    P   ++M
Sbjct: 236 NILLRRHYSMNSTTYVTLTI-VLMTMTLMTLWLEPSSTERM 275


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 331 NCENRYIRFILVFTGRYMFCDY 266
           NC+N      L+   RY+FC+Y
Sbjct: 34  NCKNYDHPTTLLKLKRYLFCEY 55


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 319 GFRNYIGMFISSRFYVVRFCRMP*IKRDVSIW 414
           G RNY+  F+S  +   R    P  + +++ W
Sbjct: 335 GIRNYLTKFVSEYWMETRGFLQPVCQNEMNKW 366


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 277 FCDYICCTVVLFPNNFLKNSQHSNI 203
           F  Y+    V +P N  +NS+ S I
Sbjct: 168 FATYVDINYVEYPQNSKRNSEESAI 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,055
Number of Sequences: 438
Number of extensions: 3490
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)