Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0382
         (440 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   0.56 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   3.9  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   5.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   5.2  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.9  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.9  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 91  APQHYLNKKFLECINNN 41
           +P+HY N+K L+  NN+
Sbjct: 106 SPEHYYNQKTLQANNND 122


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 178 KLGFXALFILISVCNYVVIYTLNYIY 101
           KL    +FI ++V  +V+I   NY +
Sbjct: 92  KLRHYLIFIFVNVFFWVIILMSNYAF 117


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 128 RYIHIKLYLQNSCTATLF 75
           ++IHIK  +Q +  ATL+
Sbjct: 59  KFIHIKAVVQITLDATLY 76



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 181 VKLGFXALFILISVCNYVVIYTLN 110
           V LGF  +++++ +   +  YT+N
Sbjct: 248 VMLGFQDIYMIVYIIVVIFWYTVN 271


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 128 RYIHIKLYLQNSCTATLF 75
           ++IHIK  +Q +  ATL+
Sbjct: 59  KFIHIKAVVQITLDATLY 76



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 181 VKLGFXALFILISVCNYVVIYTLN 110
           V LGF  +++++ +   +  YT+N
Sbjct: 248 VMLGFQDIYMIVYIIVVIFWYTVN 271


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/54 (18%), Positives = 26/54 (48%)
 Frame = -2

Query: 253 LLNSSLFIHQL*VYQTQISSEFDFVKLGFXALFILISVCNYVVIYTLNYIYKIA 92
           LL+ ++F++ +     Q+S     +   F  +  +++    + +  LNY ++ A
Sbjct: 250 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRTA 303


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/54 (18%), Positives = 26/54 (48%)
 Frame = -2

Query: 253 LLNSSLFIHQL*VYQTQISSEFDFVKLGFXALFILISVCNYVVIYTLNYIYKIA 92
           LL+ ++F++ +     Q+S     +   F  +  +++    + +  LNY ++ A
Sbjct: 250 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRTA 303


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/54 (18%), Positives = 26/54 (48%)
 Frame = -2

Query: 253 LLNSSLFIHQL*VYQTQISSEFDFVKLGFXALFILISVCNYVVIYTLNYIYKIA 92
           LL+ ++F++ +     Q+S     +   F  +  +++    + +  LNY ++ A
Sbjct: 250 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRTA 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,452
Number of Sequences: 336
Number of extensions: 1285
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)