Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0382
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amin...    27   6.0  

>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 163 ALFILISVCNYVVIYTLNYIYKIAAPQHYLN 71
           +L +L+ VC ++ +  L     I  PQH+LN
Sbjct: 188 SLLLLVFVCTFISLVWLREQIIIGGPQHFLN 218


>Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical
           protein ZK829.2 protein.
          Length = 905

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 291 LEWSXRYCSCXSNC*IAVCLYINCKYIRXRY-LLNLTLSN*DFXPY 157
           ++W+  +C+  S   IAVC  + C ++R R+ L + +L N    P+
Sbjct: 636 IDWADSFCTTPSKLIIAVC-DVCCLWVRDRHKLQHASLENHPDLPF 680


>Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amino
           acid  decarboxylaseprotein.
          Length = 625

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 291 LEWSXRYCSCXSNC*IAVCLYINCKYIRXRY-LLNLTLSN*DFXPY 157
           ++W+  +C+  S   IAVC  + C ++R R+ L + +L N    P+
Sbjct: 356 IDWADSFCTTPSKLIIAVC-DVCCLWVRDRHKLQHASLENHPDLPF 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,408,251
Number of Sequences: 27780
Number of extensions: 114430
Number of successful extensions: 231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)