Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0379
         (390 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    25   0.27 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   0.81 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   1.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   2.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   2.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   7.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   7.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   7.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   10.0 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    20   10.0 
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    20   10.0 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    20   10.0 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    20   10.0 

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 25.0 bits (52), Expect = 0.27
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 250 LLDLVDGAHQPLVYLLQVATHLH 182
           LLD+V G H  L  L QVA  ++
Sbjct: 210 LLDIVHGVHNELCNLCQVANSIY 232


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 0.81
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 228 LTSLLYTCCRSPPICIEMMRRWSSSLH-HTRNVLFSLW*MP 109
           + S +   C SPP   E++RR+    +  T ++  S W +P
Sbjct: 364 INSKMIADCESPPAADELLRRFHEIRYMSTIDLRSSYWQIP 404


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 110 GIYHNENKTFLVWCNEEDHLRIISMQMGGD 199
           G  HN    F+ + ++ DH  + S  + GD
Sbjct: 360 GDLHNMGHVFISYIHDPDHRHLESFGVMGD 389


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 202 AAGIQEAGERRQRDREED 255
           A G+Q+AG++ +  ++ED
Sbjct: 67  AGGVQQAGKKPENVKKED 84


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 265 HHDRLGFLTFCPTNLGTTVR 324
           ++D + F+T CP   G T R
Sbjct: 211 YYDGVPFVTQCPIQQGNTFR 230


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 265 HHDRLGFLTFCPTNLGTTVR 324
           ++D + F+T CP   G T R
Sbjct: 211 YYDGVPFVTQCPIQQGNTFR 230


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 170 RIISMQMGGDLQQVYKRLVSAVNEIEKK 253
           RI S    GD   +Y RLVS  + ++ +
Sbjct: 536 RIWSDPSAGDDYDIYTRLVSFSDRLKSR 563


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 140 LVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEI 244
           ++W  E D  R +S      L+ +++ L  + NEI
Sbjct: 355 MIWSIETDDFRGVSGTKYPILKAIHQTLGGSSNEI 389


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 271 DRLGFLTFCPTNLGTTVR-AFRAH 339
           D + F+T CP + G T R  F  H
Sbjct: 147 DGVPFVTQCPIHPGMTFRYHFNVH 170


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 122 NENKTFLVWCNEE 160
           +E+ T LVW NE+
Sbjct: 807 HEDNTTLVWDNEQ 819


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 193 THLHRDDA 170
           THLH DDA
Sbjct: 9   THLHPDDA 16


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 193 THLHRDDA 170
           THLH DDA
Sbjct: 9   THLHPDDA 16


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 107 RGIYHNENKTFLVWCNE 157
           R IYH E + +   CNE
Sbjct: 155 RQIYHQELEKYEQACNE 171


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 40  LPVQGGRPLP 69
           LP QG  PLP
Sbjct: 188 LPTQGASPLP 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,328
Number of Sequences: 336
Number of extensions: 988
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8225022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)