Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0379
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    28   0.59 
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             25   4.1  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    24   9.5  

>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 95  WPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIEKK 253
           WP    ++  + KT L W  E   L  + + +GG   Q Y  + SA +E  KK
Sbjct: 195 WPNVGHLFAGKWKTTLPWRVESPELHAVQVHLGGSSLQWYV-IPSAHSESFKK 246


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = -1

Query: 228 LTSLLYTCCRSP 193
           LTS++Y+CC++P
Sbjct: 392 LTSVIYSCCKTP 403


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 95  WPTGRGIYHNENKTF 139
           +P GRG+Y N + TF
Sbjct: 243 YPDGRGLYQNPDGTF 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 993,154
Number of Sequences: 5004
Number of extensions: 15639
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)