Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0379
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0012 + 17147764-17148141,17148316-17148465,17149360-171497...    29   1.7  
05_05_0370 + 24466565-24468031                                         28   3.0  
05_05_0369 + 24461001-24462455                                         28   3.0  
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710     27   4.0  
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658...    27   4.0  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    27   7.0  

>01_05_0012 +
           17147764-17148141,17148316-17148465,17149360-17149729,
           17149898-17150015,17150121-17150226,17150326-17150418,
           17150498-17150593,17151169-17151891,17152012-17152160,
           17153434-17153520,17153541-17153625
          Length = 784

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 172 HHLDADGWRPAAGIQEAGERRQRDRE 249
           HH  A  W P  G +  GER + +RE
Sbjct: 22  HHASAPPWTPLGGWEGRGERERGERE 47


>05_05_0370 + 24466565-24468031
          Length = 488

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 184 ADGWRPAAGIQE-AGERRQRDREEDP----FSHHDRLGFLTFCPTN 306
           ADGW P AG +E  G+R    R+  P     +H     FLT C  N
Sbjct: 319 ADGWAPPAGWEERVGDRGLLVRDWVPQTAILAHSATAAFLTHCGWN 364


>05_05_0369 + 24461001-24462455
          Length = 484

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 184 ADGWRPAAGIQE-AGERRQRDREEDP----FSHHDRLGFLTFCPTN 306
           ADGW P AG +E  G+R    R+  P     +H     FLT C  N
Sbjct: 317 ADGWAPPAGWEERVGDRGLLVRDWVPQTAILAHSATAAFLTHCGWN 362


>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
          Length = 640

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = +1

Query: 184 ADGWRPAAGIQE-AGERRQRDREEDP----FSHHDRLGFLTFC 297
           ADGW P AG +E  GER    R   P     SH     FLT C
Sbjct: 317 ADGWSPPAGWEERVGERGVLVRGWVPQTAILSHPATAAFLTHC 359


>02_04_0281 +
           21563588-21563696,21565053-21565708,21565793-21565879,
           21566487-21567461,21567640-21567786
          Length = 657

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 172 HHLDADGWRPAAGIQEAGERRQRDREEDPFSHHDR 276
           H  D DG   + G    G  R+R+RE++ F   DR
Sbjct: 74  HDRDRDGMGKSRGYASFGRNREREREKE-FDSRDR 107


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 223 GERRQRDREEDPFSHHDRLGFLTFCPTNLGTT 318
           G+++QR+ EED     +RL  +     N G T
Sbjct: 80  GQQQQREEEEDAVDERERLRRMRISKANKGNT 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,520,193
Number of Sequences: 37544
Number of extensions: 133639
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)