Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0379
(390 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-2|AAO21426.1| 359|Caenorhabditis elegans Hypothetical pr... 142 6e-35
U41543-1|AAB37022.2| 396|Caenorhabditis elegans Hypothetical pr... 142 6e-35
AF043703-6|AAK21503.1| 399|Caenorhabditis elegans Hypothetical ... 130 3e-31
AF003148-10|AAB54206.2| 427|Caenorhabditis elegans Hypothetical... 130 3e-31
Z83109-2|CAB05517.1| 372|Caenorhabditis elegans Hypothetical pr... 128 1e-30
Z75714-4|CAB00062.1| 360|Caenorhabditis elegans Hypothetical pr... 127 2e-30
Z82072-2|CAB04921.1| 329|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z81029-8|CAB02702.1| 329|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z36753-4|CAA85333.1| 163|Caenorhabditis elegans Hypothetical pr... 26 8.2
>U41543-2|AAO21426.1| 359|Caenorhabditis elegans Hypothetical
protein F46H5.3b protein.
Length = 359
Score = 142 bits (345), Expect = 6e-35
Identities = 66/118 (55%), Positives = 78/118 (66%)
Frame = +2
Query: 5 TRETQQQLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISM 184
T+E Q QLI DHFLFKEGDRFLQAANACR+WP GRGI+HN KTFL+WCNEEDHLRIISM
Sbjct: 178 TKEIQDQLIKDHFLFKEGDRFLQAANACRYWPKGRGIFHNNQKTFLIWCNEEDHLRIISM 237
Query: 185 QMGGDLQQVYKRLVSAVNEIEKKXXXXXXXXXXXXXXXXPTWAPRSAPFVHIKLXKLA 358
Q GG++ QV +RL+ V IEK+ VHI+L K++
Sbjct: 238 QEGGNVGQVLERLIKGVKTIEKQAPFSRDDRLGWLTFCPSNLGTTVRASVHIRLPKIS 295
>U41543-1|AAB37022.2| 396|Caenorhabditis elegans Hypothetical
protein F46H5.3a protein.
Length = 396
Score = 142 bits (345), Expect = 6e-35
Identities = 66/118 (55%), Positives = 78/118 (66%)
Frame = +2
Query: 5 TRETQQQLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISM 184
T+E Q QLI DHFLFKEGDRFLQAANACR+WP GRGI+HN KTFL+WCNEEDHLRIISM
Sbjct: 215 TKEIQDQLIKDHFLFKEGDRFLQAANACRYWPKGRGIFHNNQKTFLIWCNEEDHLRIISM 274
Query: 185 QMGGDLQQVYKRLVSAVNEIEKKXXXXXXXXXXXXXXXXPTWAPRSAPFVHIKLXKLA 358
Q GG++ QV +RL+ V IEK+ VHI+L K++
Sbjct: 275 QEGGNVGQVLERLIKGVKTIEKQAPFSRDDRLGWLTFCPSNLGTTVRASVHIRLPKIS 332
>AF043703-6|AAK21503.1| 399|Caenorhabditis elegans Hypothetical
protein W10C8.5 protein.
Length = 399
Score = 130 bits (314), Expect = 3e-31
Identities = 64/124 (51%), Positives = 75/124 (60%)
Frame = +2
Query: 8 RETQQQLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQ 187
++TQ+QLI DHFLFKEGDR LQ ANAC FWP GRGI+HN +KTFL+W NEEDH+RIISMQ
Sbjct: 218 KDTQKQLIADHFLFKEGDRHLQYANACNFWPKGRGIFHNNDKTFLIWVNEEDHMRIISMQ 277
Query: 188 MGGDLQQVYKRLVSAVNEIEKKXXXXXXXXXXXXXXXXPTWAPRSAPFVHIKLXKLAXDK 367
G D+ V RL+ V IEK+ VHI L KLA K
Sbjct: 278 EGSDVGAVLDRLIKGVRGIEKQVPFSRDDRLGWLTFCPTNLGSTVRASVHIALPKLAARK 337
Query: 368 XKLE 379
+E
Sbjct: 338 DFIE 341
>AF003148-10|AAB54206.2| 427|Caenorhabditis elegans Hypothetical
protein F32B5.1 protein.
Length = 427
Score = 130 bits (314), Expect = 3e-31
Identities = 64/124 (51%), Positives = 75/124 (60%)
Frame = +2
Query: 8 RETQQQLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQ 187
++TQ+QLI DHFLFKEGDR LQ ANAC FWP GRGI+HN +KTFL+W NEEDH+RIISMQ
Sbjct: 246 KDTQKQLIADHFLFKEGDRHLQYANACNFWPKGRGIFHNNDKTFLIWVNEEDHMRIISMQ 305
Query: 188 MGGDLQQVYKRLVSAVNEIEKKXXXXXXXXXXXXXXXXPTWAPRSAPFVHIKLXKLAXDK 367
G D+ V RL+ V IEK+ VHI L KLA K
Sbjct: 306 EGSDVGAVLDRLIKGVRGIEKQVPFSRDDRLGWLTFCPTNLGSTVRASVHIALPKLAARK 365
Query: 368 XKLE 379
+E
Sbjct: 366 DFIE 369
>Z83109-2|CAB05517.1| 372|Caenorhabditis elegans Hypothetical
protein F44G3.2 protein.
Length = 372
Score = 128 bits (309), Expect = 1e-30
Identities = 62/118 (52%), Positives = 72/118 (61%)
Frame = +2
Query: 5 TRETQQQLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISM 184
+++TQ QLI DHFLFKEGDR LQ ANAC FWP GRGI+HN KTFL+W NEEDHLRIISM
Sbjct: 190 SKDTQNQLIADHFLFKEGDRHLQYANACNFWPKGRGIFHNNKKTFLIWVNEEDHLRIISM 249
Query: 185 QMGGDLQQVYKRLVSAVNEIEKKXXXXXXXXXXXXXXXXPTWAPRSAPFVHIKLXKLA 358
Q G D+ V +RL+ V IEK+ VHI L KL+
Sbjct: 250 QEGSDVGAVLERLIKGVRGIEKQVQFSRDDRLGWLTFCPTNLGSTVRASVHIALPKLS 307
>Z75714-4|CAB00062.1| 360|Caenorhabditis elegans Hypothetical
protein ZC434.8 protein.
Length = 360
Score = 127 bits (307), Expect = 2e-30
Identities = 61/116 (52%), Positives = 75/116 (64%)
Frame = +2
Query: 11 ETQQQLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISMQM 190
ET+++LI DHFLFKEGDRFL+AANA R+WP GRGI+HNE KTFLVW NEEDHLRIISMQ
Sbjct: 180 ETKKKLIADHFLFKEGDRFLKAANANRYWPNGRGIFHNEKKTFLVWVNEEDHLRIISMQN 239
Query: 191 GGDLQQVYKRLVSAVNEIEKKXXXXXXXXXXXXXXXXPTWAPRSAPFVHIKLXKLA 358
GG++ +V RL+ +N + K VHIKL K++
Sbjct: 240 GGNVGEVLARLIKGLNLVAAKAPFARHPRLGWLTFCPTNLGTTVRASVHIKLPKIS 295
>Z82072-2|CAB04921.1| 329|Caenorhabditis elegans Hypothetical
protein W05H12.2 protein.
Length = 329
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 256 PFSHHDRLGFLTFCPTNLGTTVRAFRAH 339
P H DRL LTFC + T V +R H
Sbjct: 194 PVRHRDRLALLTFCDIDTQTIV-LWRIH 220
>Z81029-8|CAB02702.1| 329|Caenorhabditis elegans Hypothetical
protein W05H12.2 protein.
Length = 329
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 256 PFSHHDRLGFLTFCPTNLGTTVRAFRAH 339
P H DRL LTFC + T V +R H
Sbjct: 194 PVRHRDRLALLTFCDIDTQTIV-LWRIH 220
>Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical
protein C07A4.3 protein.
Length = 363
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 246 SISLTALTSLLYTCC--RSPPICIEMMRRWSSSLHHTRNVLFS 124
SIS +A ++ C R + RW SS+HH+ V FS
Sbjct: 19 SISKSAKIPFVFVCIHPRFTKNIRNVENRWQSSMHHSLEVPFS 61
>Z36753-4|CAA85333.1| 163|Caenorhabditis elegans Hypothetical
protein T09A5.5 protein.
Length = 163
Score = 26.2 bits (55), Expect = 8.2
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 65 FLQAA-NACRFWPTGRGIYHNENKTFLVWCNEEDHLRIIS-MQMGGDLQQVYKRLVS 229
FLQ + C + G + K + W ++E L +I M +GGD ++ YKR V+
Sbjct: 56 FLQRSYTTCDPFVVGEYSWLRHRKKRVNWKSKEQVLSMIEEMSIGGDYREGYKRGVN 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,796,359
Number of Sequences: 27780
Number of extensions: 99245
Number of successful extensions: 253
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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