Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0379
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.   184   3e-49
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    91   4e-21
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.6  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score =  184 bits (448), Expect = 3e-49
 Identities = 87/128 (67%), Positives = 97/128 (75%)
 Frame = +2

Query: 5   TRETQQQLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNENKTFLVWCNEEDHLRIISM 184
           ++ETQQ+LIDDHFLFKEGDRFLQAANACRFWPTGRGIYHN++KTFLVWCNEEDHLRIISM
Sbjct: 173 SKETQQKLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNDDKTFLVWCNEEDHLRIISM 232

Query: 185 QMGGDLQQVYKRLVSAVNEIEKKXXXXXXXXXXXXXXXXPTWAPRSAPFVHIKLXKLAXD 364
           QMGGDL QVY+RLV AVNEIEK+                          VHIKL KLA +
Sbjct: 233 QMGGDLGQVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCPTNLGTTVRASVHIKLPKLAAN 292

Query: 365 KXKLEEVA 388
           + KLEE+A
Sbjct: 293 RAKLEEIA 300


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 91.1 bits (216), Expect = 4e-21
 Identities = 38/44 (86%), Positives = 43/44 (97%)
 Frame = +2

Query: 5   TRETQQQLIDDHFLFKEGDRFLQAANACRFWPTGRGIYHNENKT 136
           ++ETQQ+LIDDHFLFKEGDRFLQAANA RFWPTGRGIYHN++KT
Sbjct: 157 SKETQQKLIDDHFLFKEGDRFLQAANAXRFWPTGRGIYHNDDKT 200


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 92  FWPTGRGIYHNENKTFLVWCNEEDHLRIISMQM 190
           F+  GRGI + + K   V  +++ H++I    M
Sbjct: 99  FFLHGRGIVYRDLKLDNVLLDQDGHIKIADFGM 131


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 202 AAGIQEAGE-RRQRDREEDPFSHHDRL 279
           A GIQ+AG+ + + D ++D  S ++ +
Sbjct: 72  AGGIQQAGKPKEETDDKDDDESDNENI 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,932
Number of Sequences: 438
Number of extensions: 1305
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)