Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0379
         (390 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14710.1 68418.m01725 expressed protein                             29   0.84 
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr...    29   0.84 
At1g07560.1 68414.m00809 leucine-rich repeat protein kinase, put...    29   1.1  
At1g07530.1 68414.m00806 scarecrow-like transcription factor 14 ...    28   2.6  
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put...    27   3.4  
At1g55580.1 68414.m06361 scarecrow transcription factor family p...    27   3.4  
At2g23093.1 68415.m02754 expressed protein                             27   5.9  

>At5g14710.1 68418.m01725 expressed protein
          Length = 124

 Score = 29.5 bits (63), Expect = 0.84
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 128 NKTFLVWCNEEDHLRIISMQMG 193
           NKT +V C+ EDH+ II+ Q+G
Sbjct: 22  NKTEIVICSYEDHILIIATQIG 43


>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 872

 Score = 29.5 bits (63), Expect = 0.84
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 119 HNENKTFLV-WCNEEDHLRII-SMQMGGDLQQ 208
           H+ N   LV +CNEEDHL ++      GDL+Q
Sbjct: 617 HHTNLVNLVGYCNEEDHLALVYEYAANGDLKQ 648


>At1g07560.1 68414.m00809 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 856

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 113 IYHNENKTFLVWCNEEDHLRIISMQM-GGDLQQ 208
           +YH    + + +C+E+DHL +I   M  GDL++
Sbjct: 606 VYHTNLVSLVGYCDEKDHLALIYQYMVNGDLKK 638


>At1g07530.1 68414.m00806 scarecrow-like transcription factor 14
           (SCL14) identical to GB:AAD24412 from [Arabidopsis
           thaliana] (Plant J. 18 (1), 111-119 (1999))
          Length = 769

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 190 GWRPAAGIQEAGERRQR--DREEDPFSHH 270
           G+RPA G+QE G R  R   R   PF ++
Sbjct: 543 GFRPAEGVQETGHRLARYCQRHNVPFEYN 571


>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 786

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 119 HNENKTFLV-WCNEEDHLRIISMQM-GGDLQQ 208
           H++N   LV +C+E DHL +I   M  GDL+Q
Sbjct: 531 HHKNLVSLVGYCDEGDHLALIYEYMPNGDLKQ 562


>At1g55580.1 68414.m06361 scarecrow transcription factor family
           protein contains Pfam profile PF03514: GRAS family
           transcription factor
          Length = 445

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 252 FFSISLTALTSLLYTCCRSPPICIEMMRRWSSSLHHTRNVLFS 124
           F S S ++  +   T    PP+CI      +S+ HH R +LF+
Sbjct: 5   FKSSSSSSEDATATTTENPPPLCIASSSAATSASHHLRRLLFT 47


>At2g23093.1 68415.m02754 expressed protein
          Length = 449

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 186 CIEMMRRWSSSLHH 145
           CI M+RRW  S HH
Sbjct: 431 CIYMLRRWGKSPHH 444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,533,315
Number of Sequences: 28952
Number of extensions: 92876
Number of successful extensions: 295
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)