Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0375
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    29   0.36 
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   4.4  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   4.4  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   5.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   7.7  

>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 173 FSTFPSDDELYCARFTITPLTPD 105
           FSTF  DD  Y +RF+  P+ P+
Sbjct: 187 FSTFTIDDSRYLSRFSFPPMMPE 209


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 396 RRYP-SXEERCIACKLCRSHLSSTGY 470
           R YP   + RC  C  C++HL+  G+
Sbjct: 3   RYYPVHLKSRCYVCAKCKTHLAFKGH 28


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 342 YPFEKGPLXPRFRGEHALRRYPS 410
           +P+ KG    RF   H+L R PS
Sbjct: 89  FPYLKGSFDDRFSSTHSLTRQPS 111


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 119 PLTPDARTRDETENIFAKDIFSLN*VVSLELT 24
           PLTP     +ET  I  KD   L  +VS+ +T
Sbjct: 336 PLTPGWSAHEETNRISPKDANVLPSIVSIPIT 367


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 266 CLSCLSDIALKDMSCSSAFTYLYPGMFCG 180
           C  CL + + +++ C+   T LYP + CG
Sbjct: 609 CPRCL-EASFEELPCTCGRTRLYPPVACG 636


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 148 SSSEGNVEKVYPQNIPGYKYVNAEEQ 225
           S+S  NV+++ PQN  G K  + EE+
Sbjct: 96  SNSLDNVQEINPQNTIGDKSAHTEEE 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,841
Number of Sequences: 5004
Number of extensions: 39907
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)