Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0375
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797...    81   8e-16
11_02_0137 - 8702661-8703495,8703820-8704628                           28   4.5  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    28   5.9  
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63...    27   7.8  

>03_06_0128 -
           31879286-31879381,31879463-31879574,31879680-31879747,
           31880959-31881072,31881207-31881247,31881340-31881393,
           31881785-31881866,31882063-31882116
          Length = 206

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +3

Query: 336 INYPFEKGPLXPRFRGEHALRRYPSXEERCIACKLCRS 449
           INYPFEKGPL PRFRGEHALRRYP+ EERCIACKLC +
Sbjct: 78  INYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEA 115



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = +1

Query: 445 EAICPAQAIXIEAQERXDGSRXPLYXIFDXTKCLYCGFC 561
           EAICPAQAI IEA+ER DGSR       D TKC+YCGFC
Sbjct: 114 EAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFC 152


>11_02_0137 - 8702661-8703495,8703820-8704628
          Length = 547

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 234 RHVLFLCIHIFISRYVLW 181
           RH+L LCI +F++ Y  W
Sbjct: 120 RHLLNLCIQVFLALYAFW 137


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 310 AKVTANPRANSVQNIV*AAYLT*P*KTCLVPLHSHIYIQVCS 185
           +K+ A  R+ SV  ++   YL    K C VP   HI + V S
Sbjct: 439 SKIIATTRSGSVVQVLYTGYLANERKVCPVPEPDHINLGVLS 480


>08_01_0087 +
           630355-630403,630502-630699,631858-631943,632238-632946,
           633029-633194,633459-633934,634023-634873,635078-635987,
           636597-636784
          Length = 1210

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 211 SHIYIQVCSVGKPSQHFLLMMS 146
           +H+Y++    G P  HFLL+MS
Sbjct: 736 AHVYVEFQKRGLPHAHFLLIMS 757


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,245
Number of Sequences: 37544
Number of extensions: 248455
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)