Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0375
         (564 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U65579-1|AAB51776.1|  210|Homo sapiens mitochondrial NADH dehydr...   117   3e-26
BC119754-1|AAI19755.1|  210|Homo sapiens NADH dehydrogenase (ubi...   117   3e-26
AK223114-1|BAD96834.1|  210|Homo sapiens NADH dehydrogenase (ubi...   117   3e-26
AF038406-1|AAC34273.1|  210|Homo sapiens NADH dehydrogenase-ubiq...   117   3e-26

>U65579-1|AAB51776.1|  210|Homo sapiens mitochondrial NADH
           dehydrogenase-ubiquinone Fe-S protein 8, 23 kDa subunit
           prec protein.
          Length = 210

 Score =  117 bits (281), Expect = 3e-26
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = +3

Query: 255 AAQTMFWTELARGFAVTLAHIFKEPAXINYPFEKGPLXPRFRGEHALRRYPSXEERCIAC 434
           AA+T+ WTEL RG  +TL+++F+EPA INYPFEKGPL PRFRGEHALRRYPS EERCIAC
Sbjct: 55  AARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIAC 114

Query: 435 KLCRS 449
           KLC +
Sbjct: 115 KLCEA 119



 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
 Frame = +1

Query: 199 YKYVNAEEQDMSFRAMSDRQLRQCSGLS*PEDXXXXXXIFSRNQXQSTIHLRKG--HXRL 372
           YKYVN ++ +M  ++++DR  R                   R          KG    R 
Sbjct: 36  YKYVNMQDPEMDMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRF 95

Query: 373 GSEVNMLYVATLXEKKGALLVSCAEAICPAQAIXIEAQERXDGSRXPLYXIFDXTKCLYC 552
             E  +    +  E+   +     EAICPAQAI IEA+ R DGSR       D TKC+YC
Sbjct: 96  RGEHALRRYPSGEER--CIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYC 153

Query: 553 GFC 561
           GFC
Sbjct: 154 GFC 156


>BC119754-1|AAI19755.1|  210|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q
           reductas protein.
          Length = 210

 Score =  117 bits (281), Expect = 3e-26
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = +3

Query: 255 AAQTMFWTELARGFAVTLAHIFKEPAXINYPFEKGPLXPRFRGEHALRRYPSXEERCIAC 434
           AA+T+ WTEL RG  +TL+++F+EPA INYPFEKGPL PRFRGEHALRRYPS EERCIAC
Sbjct: 55  AARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIAC 114

Query: 435 KLCRS 449
           KLC +
Sbjct: 115 KLCEA 119



 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
 Frame = +1

Query: 199 YKYVNAEEQDMSFRAMSDRQLRQCSGLS*PEDXXXXXXIFSRNQXQSTIHLRKG--HXRL 372
           YKYVN ++ +M  ++++DR  R                   R          KG    R 
Sbjct: 36  YKYVNMQDPEMDMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRF 95

Query: 373 GSEVNMLYVATLXEKKGALLVSCAEAICPAQAIXIEAQERXDGSRXPLYXIFDXTKCLYC 552
             E  +    +  E+   +     EAICPAQAI IEA+ R DGSR       D TKC+YC
Sbjct: 96  RGEHALRRYPSGEER--CIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYC 153

Query: 553 GFC 561
           GFC
Sbjct: 154 GFC 156


>AK223114-1|BAD96834.1|  210|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q
           reductas protein.
          Length = 210

 Score =  117 bits (281), Expect = 3e-26
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = +3

Query: 255 AAQTMFWTELARGFAVTLAHIFKEPAXINYPFEKGPLXPRFRGEHALRRYPSXEERCIAC 434
           AA+T+ WTEL RG  +TL+++F+EPA INYPFEKGPL PRFRGEHALRRYPS EERCIAC
Sbjct: 55  AARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIAC 114

Query: 435 KLCRS 449
           KLC +
Sbjct: 115 KLCEA 119



 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 41/123 (33%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
 Frame = +1

Query: 199 YKYVNAEEQDMSFRAMSDRQLRQCSGLS*PEDXXXXXXIFSRNQXQSTIHLRKG--HXRL 372
           YKYVN ++ +M   +++DR  R                   R          KG    R 
Sbjct: 36  YKYVNMQDPEMDMESVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRF 95

Query: 373 GSEVNMLYVATLXEKKGALLVSCAEAICPAQAIXIEAQERXDGSRXPLYXIFDXTKCLYC 552
             E  +    +  E+   +     EAICPAQAI IEA+ R DGSR       D TKC+YC
Sbjct: 96  RGEHALRRYPSGEER--CIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYC 153

Query: 553 GFC 561
           GFC
Sbjct: 154 GFC 156


>AF038406-1|AAC34273.1|  210|Homo sapiens NADH
           dehydrogenase-ubiquinone Fe-S protein 8 23 kDa subunit
           protein.
          Length = 210

 Score =  117 bits (281), Expect = 3e-26
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = +3

Query: 255 AAQTMFWTELARGFAVTLAHIFKEPAXINYPFEKGPLXPRFRGEHALRRYPSXEERCIAC 434
           AA+T+ WTEL RG  +TL+++F+EPA INYPFEKGPL PRFRGEHALRRYPS EERCIAC
Sbjct: 55  AARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIAC 114

Query: 435 KLCRS 449
           KLC +
Sbjct: 115 KLCEA 119



 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
 Frame = +1

Query: 199 YKYVNAEEQDMSFRAMSDRQLRQCSGLS*PEDXXXXXXIFSRNQXQSTIHLRKG--HXRL 372
           YKYVN ++ +M  ++++DR  R                   R          KG    R 
Sbjct: 36  YKYVNMQDPEMDMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRF 95

Query: 373 GSEVNMLYVATLXEKKGALLVSCAEAICPAQAIXIEAQERXDGSRXPLYXIFDXTKCLYC 552
             E  +    +  E+   +     EAICPAQAI IEA+ R DGSR       D TKC+YC
Sbjct: 96  RGEHALRRYPSGEER--CIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYC 153

Query: 553 GFC 561
           GFC
Sbjct: 154 GFC 156


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,502,938
Number of Sequences: 237096
Number of extensions: 1437702
Number of successful extensions: 5834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5834
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)