Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0375
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical pr...   108   2e-24
AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH oxidored...   108   2e-24
U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related...    28   4.0  

>U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical
           protein T20H4.5 protein.
          Length = 212

 Score =  108 bits (260), Expect = 2e-24
 Identities = 47/61 (77%), Positives = 51/61 (83%)
 Frame = +3

Query: 267 MFWTELARGFAVTLAHIFKEPAXINYPFEKGPLXPRFRGEHALRRYPSXEERCIACKLCR 446
           +F+TEL RGF V L H+F EPA INYPFEKGPL  RFRGEHALRRYPS EERCIACKLC 
Sbjct: 61  VFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERCIACKLCE 120

Query: 447 S 449
           +
Sbjct: 121 A 121



 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 25/39 (64%), Positives = 27/39 (69%)
 Frame = +1

Query: 445 EAICPAQAIXIEAQERXDGSRXPLYXIFDXTKCLYCGFC 561
           EAICPAQAI IEA+ R DGSR       D TKC+YCG C
Sbjct: 120 EAICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLC 158


>AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH
           oxidoreductase complex I 23.8kDa subunit protein.
          Length = 212

 Score =  108 bits (260), Expect = 2e-24
 Identities = 47/61 (77%), Positives = 51/61 (83%)
 Frame = +3

Query: 267 MFWTELARGFAVTLAHIFKEPAXINYPFEKGPLXPRFRGEHALRRYPSXEERCIACKLCR 446
           +F+TEL RGF V L H+F EPA INYPFEKGPL  RFRGEHALRRYPS EERCIACKLC 
Sbjct: 61  VFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERCIACKLCE 120

Query: 447 S 449
           +
Sbjct: 121 A 121



 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 25/39 (64%), Positives = 27/39 (69%)
 Frame = +1

Query: 445 EAICPAQAIXIEAQERXDGSRXPLYXIFDXTKCLYCGFC 561
           EAICPAQAI IEA+ R DGSR       D TKC+YCG C
Sbjct: 120 EAICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLC 158


>U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related
           family protein 1 protein.
          Length = 956

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 339 NYPFEKGPLXPRFRGEHALRRYPSXEERCIACKLCRS 449
           N  FE+ P    FR +  LR Y +  +   +CKL RS
Sbjct: 709 NTTFEETPRITAFRFQLGLRNYRTPTDHTHSCKLMRS 745


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,907,789
Number of Sequences: 27780
Number of extensions: 229622
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)