Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0375
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s...    99   1e-21
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s...    99   1e-21
At2g32680.1 68415.m03995 disease resistance family protein conta...    28   3.7  
At4g00700.1 68417.m00096 C2 domain-containing protein contains I...    27   6.5  
At3g24900.1 68416.m03122 disease resistance family protein / LRR...    27   8.7  

>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial (TYKY) identical to SP|Q42599
           NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}
          Length = 222

 Score =   99 bits (238), Expect = 1e-21
 Identities = 42/62 (67%), Positives = 49/62 (79%)
 Frame = +3

Query: 264 TMFWTELARGFAVTLAHIFKEPAXINYPFEKGPLXPRFRGEHALRRYPSXEERCIACKLC 443
           T+F TE+ RG ++TL + F     INYPFEKGPL PRFRGEHALRRYP+ EERCIACKLC
Sbjct: 70  TLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLC 129

Query: 444 RS 449
            +
Sbjct: 130 EA 131



 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 26/39 (66%), Positives = 29/39 (74%)
 Frame = +1

Query: 445 EAICPAQAIXIEAQERXDGSRXPLYXIFDXTKCLYCGFC 561
           EA+CPAQAI IEA+ER DGSR       D TKC+YCGFC
Sbjct: 130 EAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFC 168


>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial, putative very strong similarity
           to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
           profile PF00037: iron-sulfur cluster-binding protein
          Length = 222

 Score =   99 bits (238), Expect = 1e-21
 Identities = 42/62 (67%), Positives = 49/62 (79%)
 Frame = +3

Query: 264 TMFWTELARGFAVTLAHIFKEPAXINYPFEKGPLXPRFRGEHALRRYPSXEERCIACKLC 443
           T+F TE+ RG ++TL + F     INYPFEKGPL PRFRGEHALRRYP+ EERCIACKLC
Sbjct: 70  TLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLC 129

Query: 444 RS 449
            +
Sbjct: 130 EA 131



 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 26/39 (66%), Positives = 29/39 (74%)
 Frame = +1

Query: 445 EAICPAQAIXIEAQERXDGSRXPLYXIFDXTKCLYCGFC 561
           EA+CPAQAI IEA+ER DGSR       D TKC+YCGFC
Sbjct: 130 EAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFC 168


>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 117 WCDSETGTVQLIIRRKC*EG 176
           WCD+ TG V ++  RKC  G
Sbjct: 67  WCDNSTGAVAVLQLRKCLSG 86


>At4g00700.1 68417.m00096 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1006

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 324 EPAXINYPFEKGPLXPRFRGEHALR 398
           E A  NYP EK  +  R RGE  LR
Sbjct: 102 EAAPFNYPLEKRSVFSRARGELCLR 126


>At3g24900.1 68416.m03122 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 884

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 96  STSIRS*WCDSETGTVQLIIRRKC*EG 176
           S S+   WCD+ TG V  +  R C  G
Sbjct: 61  SDSLNGVWCDNSTGAVMKLRLRACLSG 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,103,269
Number of Sequences: 28952
Number of extensions: 208404
Number of successful extensions: 357
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)